View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11175_low_28 (Length: 280)
Name: NF11175_low_28
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11175_low_28 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0129 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 9414528 - 9414792
Alignment:
| Q |
16 |
atgaaagattgttgatgaccattcaatgtcgacatatcttttacaaatttcaaactcttctacatagctaaatcttctgtaacctccgagtctaataaag |
115 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9414528 |
atgagagattgttgataaccattcaatgtcgacatatcttttacaaatttcaaacccttccgcatagctaaatcttctgcaacctccgagtctaataaag |
9414627 |
T |
|
| Q |
116 |
aaaagacttgtcaagaactaaaggtgacaacaccttcattatctcttacctcaacattaatactctacttaccctcctctatctaagttttaaggaaaaa |
215 |
Q |
| |
|
|||||||||||||| |||||||| | ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9414628 |
aaaagacttgtcaacaactaaagataacaacaccttcatcatctcttacctcaacactaatactctacttaccctcctctatctaagttttaaggaaaaa |
9414727 |
T |
|
| Q |
216 |
ttgaagttcatacgatnnnnnnntcaagaaaaattaaattcggattcttgctaactctaaaattt |
280 |
Q |
| |
|
|||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9414728 |
ttgaagttcagaagataaaaaaatcaagaaaaattaaattcggattcttgctaactctaaaattt |
9414792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 171
Target Start/End: Original strand, 44785 - 44899
Alignment:
| Q |
59 |
caaatttcaaactcttctacatagctaaatcttctgtaacctccgagtctaataaagaaaagacttgtcaagaactaaag--gtgacaacaccttcatta |
156 |
Q |
| |
|
|||||||||||| ||||||||||| || | |||||| |||||| || ||| ||| |||||||||||| | |||||| || |||||||| |||||||| |
|
|
| T |
44785 |
caaatttcaaacccttctacatagttagagcttctgcaacctctgaatctggtaatgaaaagacttgttaggaactagagcaatgacaacatcttcatta |
44884 |
T |
|
| Q |
157 |
tctcttacctcaaca |
171 |
Q |
| |
|
||||| ||| ||||| |
|
|
| T |
44885 |
tctctcaccacaaca |
44899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 27214266 - 27214323
Alignment:
| Q |
141 |
gacaacaccttcattatctcttacctcaacattaatactctacttaccctcctctatc |
198 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||| | |||||||||| |||||| |
|
|
| T |
27214266 |
gacaacaccttcattatctcttaccacaacaccaataccccacttaccctcttctatc |
27214323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 15908168 - 15908282
Alignment:
| Q |
51 |
atcttttacaaatttcaaactcttctacatagctaaatcttctgtaacctccgagtctaataaagaaaagacttgtcaagaactaaag---gtgacaaca |
147 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||| ||| || ||||| || || ||| ||||||| ||||||| ||||| | | ||||||| |
|
|
| T |
15908168 |
atctttcacaaatttcaaactcttctgcatagctaaagcttttgcaacctatgaacctggtaatgaaaagatttgtcaacaactagcggcagcgacaaca |
15908267 |
T |
|
| Q |
148 |
ccttcattatctctt |
162 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
15908268 |
ccttcattatctctt |
15908282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 19624972 - 19625045
Alignment:
| Q |
46 |
gacatatcttttacaaatttcaaactcttctacatagctaaatcttctgtaacctccgagtctaataaagaaaa |
119 |
Q |
| |
|
||||| ||||| | |||||| |||||||||| ||||||||||||||||| |||||| || ||| |||| ||||| |
|
|
| T |
19624972 |
gacatgtctttcaaaaatttgaaactcttctgcatagctaaatcttctgcaacctctgaatctgataatgaaaa |
19625045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 7109231 - 7109142
Alignment:
| Q |
46 |
gacatatcttttacaaatttcaaactcttctacatagctaaatcttctgtaacctccgagtctaataaagaaaagacttgtcaagaacta |
135 |
Q |
| |
|
||||| || |||||||||||||||| ||||| |||||||| |||| || |||||| || ||| | | ||||||||||| ||||||||| |
|
|
| T |
7109231 |
gacatgtcatttacaaatttcaaacccttctgcatagctatgtcttttgcaacctctgaatctggtgatgaaaagacttgccaagaacta |
7109142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 40756531 - 40756620
Alignment:
| Q |
46 |
gacatatcttttacaaatttcaaactcttctacatagctaaatcttctgtaacctccgagtctaataaagaaaagacttgtcaagaacta |
135 |
Q |
| |
|
||||| |||||| |||||| ||| | |||||||||||||||| |||| | |||||| || ||| ||| ||||| |||||||| |||||| |
|
|
| T |
40756531 |
gacatgtcttttgcaaattacaatcccttctacatagctaaagcttccgcaacctctgaatctggtaatgaaaatacttgtcaggaacta |
40756620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University