View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11175_low_3 (Length: 635)

Name: NF11175_low_3
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11175_low_3
NF11175_low_3
[»] chr6 (11 HSPs)
chr6 (18-621)||(6921292-6921895)
chr6 (18-598)||(6947845-6948422)
chr6 (68-592)||(6935189-6935698)
chr6 (68-617)||(6942913-6943434)
chr6 (75-618)||(6954464-6955004)
chr6 (345-563)||(20770502-20770720)
chr6 (504-573)||(17369675-17369744)
chr6 (489-559)||(14749393-14749463)
chr6 (483-561)||(24254428-24254506)
chr6 (348-420)||(24950272-24950344)
chr6 (493-557)||(24950150-24950214)
[»] chr7 (58 HSPs)
chr7 (18-588)||(1985930-1986500)
chr7 (87-573)||(15571885-15572386)
chr7 (340-563)||(13416911-13417146)
chr7 (440-573)||(18514777-18514910)
chr7 (492-573)||(14076677-14076758)
chr7 (492-573)||(14386705-14386786)
chr7 (340-416)||(14076542-14076618)
chr7 (340-416)||(14386570-14386646)
chr7 (445-575)||(19344563-19344693)
chr7 (494-563)||(660847-660916)
chr7 (467-562)||(19604464-19604559)
chr7 (483-556)||(22021382-22021455)
chr7 (455-563)||(6864807-6864914)
chr7 (478-562)||(29867221-29867305)
chr7 (487-561)||(22028622-22028696)
chr7 (493-563)||(29454103-29454173)
chr7 (504-562)||(29881267-29881325)
chr7 (493-561)||(12819918-12819986)
chr7 (489-561)||(19351071-19351143)
chr7 (467-563)||(20058057-20058153)
chr7 (487-563)||(20352089-20352165)
chr7 (487-563)||(22063636-22063712)
chr7 (467-563)||(22100467-22100563)
chr7 (499-563)||(29874517-29874581)
chr7 (493-576)||(29921980-29922063)
chr7 (340-426)||(18514945-18515031)
chr7 (483-540)||(9807814-9807871)
chr7 (489-562)||(18952906-18952979)
chr7 (489-562)||(18982953-18983026)
chr7 (489-562)||(18997599-18997672)
chr7 (486-562)||(20338917-20338993)
chr7 (352-420)||(24385051-24385119)
chr7 (492-571)||(22070110-22070189)
chr7 (357-404)||(24391269-24391316)
chr7 (468-559)||(36263028-36263119)
chr7 (483-561)||(19325987-19326065)
chr7 (493-563)||(19637217-19637287)
chr7 (487-573)||(20374493-20374579)
chr7 (493-563)||(29859454-29859524)
chr7 (493-562)||(29106814-29106883)
chr7 (478-563)||(29431001-29431086)
chr7 (487-556)||(29445663-29445732)
chr7 (451-547)||(15443922-15444018)
chr7 (489-561)||(19357906-19357978)
chr7 (493-561)||(19722018-19722086)
chr7 (487-543)||(22080862-22080918)
chr7 (493-561)||(29899374-29899442)
chr7 (504-563)||(19645630-19645689)
chr7 (468-559)||(36260228-36260319)
chr7 (485-559)||(13888098-13888172)
chr7 (331-385)||(16839559-16839613)
chr7 (515-561)||(19374778-19374824)
chr7 (493-559)||(21218712-21218778)
chr7 (495-573)||(24002201-24002279)
chr7 (450-547)||(26256732-26256829)
chr7 (451-547)||(15508704-15508800)
chr7 (504-540)||(20133340-20133376)
chr7 (504-540)||(20140841-20140877)
[»] chr4 (19 HSPs)
chr4 (450-572)||(53774797-53774919)
chr4 (450-563)||(3565701-3565814)
chr4 (487-563)||(11970982-11971058)
chr4 (487-563)||(3557720-3557796)
chr4 (487-563)||(11981683-11981759)
chr4 (455-563)||(3560958-3561066)
chr4 (450-563)||(8443454-8443567)
chr4 (486-559)||(837769-837842)
chr4 (492-558)||(35767017-35767083)
chr4 (487-564)||(6372439-6372516)
chr4 (493-562)||(53430100-53430169)
chr4 (342-391)||(53774701-53774750)
chr4 (499-563)||(1686285-1686349)
chr4 (487-562)||(6392815-6392893)
chr4 (517-561)||(53790577-53790621)
chr4 (504-563)||(6113090-6113149)
chr4 (450-525)||(10475164-10475239)
chr4 (450-523)||(10464226-10464299)
chr4 (493-569)||(10468042-10468118)
[»] chr5 (7 HSPs)
chr5 (340-573)||(18964820-18965056)
chr5 (450-561)||(29647633-29647744)
chr5 (487-561)||(29597554-29597628)
chr5 (482-561)||(29642348-29642427)
chr5 (487-562)||(24330900-24330975)
chr5 (495-544)||(23086784-23086833)
chr5 (488-556)||(28763912-28763980)
[»] chr2 (12 HSPs)
chr2 (467-573)||(14514874-14514980)
chr2 (487-561)||(18908811-18908885)
chr2 (487-561)||(18920767-18920841)
chr2 (488-561)||(18913559-18913632)
chr2 (488-563)||(554471-554546)
chr2 (492-547)||(20975557-20975612)
chr2 (340-405)||(20712691-20712756)
chr2 (493-547)||(25698507-25698561)
chr2 (340-405)||(14514730-14514795)
chr2 (338-395)||(20967545-20967602)
chr2 (491-563)||(25377072-25377144)
chr2 (340-382)||(20699621-20699663)
[»] chr1 (9 HSPs)
chr1 (493-564)||(4570927-4570998)
chr1 (492-564)||(50645484-50645556)
chr1 (487-562)||(21855384-21855459)
chr1 (496-562)||(4014966-4015032)
chr1 (493-563)||(39379061-39379131)
chr1 (493-562)||(10218985-10219054)
chr1 (498-563)||(15961233-15961298)
chr1 (493-564)||(17560772-17560843)
chr1 (500-562)||(4016773-4016835)
[»] chr3 (4 HSPs)
chr3 (499-563)||(3625740-3625804)
chr3 (491-563)||(25901279-25901351)
chr3 (491-563)||(25915297-25915369)
chr3 (488-544)||(3837904-3837960)
[»] scaffold0354 (1 HSPs)
scaffold0354 (504-573)||(7474-7543)
[»] scaffold0867 (1 HSPs)
scaffold0867 (467-563)||(4669-4765)
[»] chr8 (7 HSPs)
chr8 (475-573)||(27618473-27618571)
chr8 (495-547)||(29390288-29390340)
chr8 (487-527)||(42846461-42846501)
chr8 (495-547)||(11338592-11338644)
chr8 (495-547)||(11339435-11339487)
chr8 (495-547)||(11345117-11345169)
chr8 (518-562)||(29157073-29157117)
[»] scaffold0097 (1 HSPs)
scaffold0097 (340-405)||(16530-16595)
[»] scaffold0242 (2 HSPs)
scaffold0242 (487-556)||(13737-13806)
scaffold0242 (487-556)||(22572-22641)
[»] scaffold0267 (1 HSPs)
scaffold0267 (488-544)||(13385-13441)


Alignment Details
Target: chr6 (Bit Score: 588; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 18 - 621
Target Start/End: Complemental strand, 6921895 - 6921292
Alignment:
Q  18 acaaaatctgaaacattggtgtcttttcgcaactatcccaagcccaggaaaaatgtttgcaacttcacgtttggttatgatatttcaatagacacttaca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6921895 acaaaatctgaaacattggtgtcttttcgcaactatcccaagcccaggaaaaatgtttgcaacttcacatttggttatgatatttcaatagacacttaca 6921796  T
Q  118 agattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacggcagtaagagtttttactttgggtgataatgattggagagacattgattg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6921795 agattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacggccgtaagagtttttactttgggtgataatgattggagagacattgattg 6921696  T
Q  218 tttgcctgtggtattggtgcgtcatccttttggtaagtatgtgcgaaatggcgtttatttgaaaagtagtgttagttggtgtgttcgttgcagatattat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921695 tttgcctgtggtattggtgcgtcatccttttggtaagtatgtgcgaaatggcgtttatttgaaaagtagtgttagttggtgtgttcgttgcagatattat 6921596  T
Q  318 tgtcatttgaaaaatcttattgttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921595 tgtcatttgaaaaatcttattgttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatg 6921496  T
Q  418 aagagctacataatgttccaactctttctgtattgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaagga 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921495 aagagctacataatgttccaactctttctgtattgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaagga 6921396  T
Q  518 atttggagttgaagaatcttggactcaattccttaaaattagttatacgaatcttctaaacgattttaaaactcaggagttatataatgattcattattt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  6921395 atttggagttgaagaatcttggactcaattccttaaaattagttatacgaatcttctaaacaattttaaaactaaggagttatataatgattcattattt 6921296  T
Q  618 catc 621  Q
    ||||    
T  6921295 catc 6921292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 598
Target Start/End: Complemental strand, 6948422 - 6947845
Alignment:
Q  18 acaaaatctgaaacattggtgtcttttcgcaactatcccaagcccaggaaaaatgtttgcaacttcacgtttggttatgatatttcaatagacacttaca 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| ||| | ||||||||||||| |||||||||||||||||    
T  6948422 acaaaatctgaaacattggtgtcttttcgcaactatcccgagcccaagaaaaatatttgcaagttcgcctttggttatgataattcaatagacacttaca 6948323  T
Q  118 agattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacggcagtaagagtttttactttgggtgataatgattggagagacattgattg 217  Q
    || ||||||| |||||| |||||| |||||   |||| |||| | |||| || || | | ||||||||||||||||||||||||||||||| ||||||||    
T  6948322 aggttgtgttgttatgtatgaaaatggatg---gcgaacttaatacaaccgcggttaaactttttactttgggtgataatgattggagagaaattgattg 6948226  T
Q  218 tttgcctgtggtattggtgcgtcatccttttggtaagtatgtgcgaaatggcgtttatttgaaaagtagtgttagttggtgtgttcgttgcagatattat 317  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| || | || ||||||||||| |||||| |||||||||||||||||  | ||||||||    
T  6948225 tttgcctgtggtagtggtgagtcatccttttggtaagtatgtgagagacggtgtttatttgaatagtagtattagttggtgtgttcgtcaccgatattat 6948126  T
Q  318 tgtcatttgaaaaatcttattgttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatg 417  Q
    ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  6948125 tgtcatttgaagaatcttatggttgaacaacttgtgatgatctcacttgatttggggacagagagatatacacggttgttgctccctcgatgttgtgatg 6948026  T
Q  418 aagagctacataatgttccaactctttctgtattgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaagga 517  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||  ||||||  ||||||||||| |||||| | ||||||||||||||    
T  6948025 aagagctacatgatgttccaactctttctgtgttgatggattgcctttgtttttcacatgatttcaagaaaacccactttgttctttggcaaatgaagga 6947926  T
Q  518 atttggagttgaagaatcttggactcaattccttaaaattagttatacgaatcttctaaacgattttaaaactcaggagtt 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||| ||| |||||| ||| |||||    
T  6947925 atttggagttgaagaatcttggactcaattccttaaaattagttatgtgaatcttccaaaagatattaaaattcatgagtt 6947845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 68 - 592
Target Start/End: Complemental strand, 6935698 - 6935189
Alignment:
Q  68 aaatgtttgcaacttcacgtttggttatgatatttcaatagacacttacaagattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacg 167  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||||||||||| | ||||||||  ||||| ||||||| ||   |||||||||   |||     
T  6935698 aaatgtttgcaacttcacttttggttatgataattcaacagacacttacaagttggtgttcttcagtttggaaagggacga---cgaccttatgaaaacc 6935602  T
Q  168 gcagtaagagtttttactttgggtgataatgattggagagacattgattgtttgcctgtggtattggtgcgtcatccttttggtaagtatgtgcgaaatg 267  Q
    |   |||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||| | ||            | |||||  |||||    
T  6935601 gtgataagagtttttactttgggtgataatgattggagagacattgattgtttgcaagtggcattggtgtgcca------------gaatgtgaaaaatg 6935514  T
Q  268 gcgtttatttgaaaagtagtgttagttggtgtgttcgttgcagatattattgtcatttgaaaaatcttattgttgaacaatttgtgatgatctcacttga 367  Q
    | |||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||| |||||||  || |||||||| |||||||||||||||||    
T  6935513 gtgtttatttgaaaagtagtattagttggtgtgttcgttaccgatataattgtcatttgaagaatcttacagtcgaacaattcgtgatgatctcacttga 6935414  T
Q  368 tttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaagagctacataatgttccaactctttctgtattgatggattgcctctat 467  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    |||| |||||||||| |||||||||||||||||||    
T  6935413 tttggggacagagacatgtacaaaattgttgctccctcgatgttgtgatgaagagctacatggctttcctactctttctggattgatggattgcctctat 6935314  T
Q  468 ttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatacga 567  Q
    ||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |    
T  6935313 ttttcttatgattttaagaaaacccattatgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttatacca 6935214  T
Q  568 atcttctaaacgattttaaaactca 592  Q
    |||||| | | ||||||||||||||    
T  6935213 atcttcaacaagattttaaaactca 6935189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 68 - 617
Target Start/End: Complemental strand, 6943434 - 6942913
Alignment:
Q  68 aaatgtttgcaacttcacgtttggttatgatatttcaatagacacttacaagattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacg 167  Q
    |||||||||||||||||| ||||||||||||| ||||| | ||||||||||| | ||||| ||  ||| | ||||||  ||   |||||||||   |||     
T  6943434 aaatgtttgcaacttcacttttggttatgataattcaacaaacacttacaagttggtgttgttcagttcggaaagggtcga---cgaccttatgaaaacc 6943338  T
Q  168 gcagtaagagtttttactttgggtgataatgattggagagacattgattgtttgcctgtggtattggtgcgtcatccttttggtaagtatgtgcgaaatg 267  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||            | |||||  |||||    
T  6943337 gtggtaagagtttttactttgggtgataatgattggagagacattgattgtttgcatgtggcattggtgtgtca------------gaatgtgaaaaatg 6943250  T
Q  268 gcgtttatttgaaaagtagtgttagttggtgtgttcgttgcagatattattgtcatttgaaaaatcttattgttgaacaatttgtgatgatctcacttga 367  Q
    | |||||||||||||||||| |||||||||||||||||  | ||||| ||||||||||||| |||||||  ||||||||||| |||||||||||||||||    
T  6943249 gtgtttatttgaaaagtagtattagttggtgtgttcgtcaccgatataattgtcatttgaagaatcttacagttgaacaattcgtgatgatctcacttga 6943150  T
Q  368 tttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaagagctacataatgttccaactctttctgtattgatggattgcctctat 467  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || |||| ||             |||||||||||||||    
T  6943149 tttggggacagagacatatacaaaattgttgctccctcaatgttgtgatgaagagctacatgattttcctac-------------atggattgcctctat 6943063  T
Q  468 ttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatacga 567  Q
    ||||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |    
T  6943062 ttttcttatgattttaagaaaacctattttgttatttagcaaatgaaggaatttggagttgaagaatcttagacgcaattccttaaaattagatatacaa 6942963  T
Q  568 atcttctaaacgattttaaaactcaggagttatataatgattcattattt 617  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  6942962 atcttctaaacgattttaaaattcaggagttctataatgattcattattt 6942913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 75 - 618
Target Start/End: Complemental strand, 6955004 - 6954464
Alignment:
Q  75 tgcaacttcacgtttggttatgatatttcaatagacacttacaagattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacggcagtaa 174  Q
    ||||| ||| ||||||||||||||| ||||| ||||||||||||||| ||||| ||||||||||||||||||| |   || |||||||||||  | || |    
T  6955004 tgcaagttcgcgtttggttatgataattcaacagacacttacaagatggtgttgttatgtttgaaaagggatggt---gagcttattgcaaccacggtta 6954908  T
Q  175 gagtttttactttgggtgataatgattggagagacattgattgtttgcctgtggtattggtgcgtcatccttttggtaagtatgtgcgaaatggcgttta 274  Q
     ||||||||||||||||||||||| ||||||||| ||||||||||| || |||| |||||||  ||||| || |   | || || | || ||   |||||    
T  6954907 aagtttttactttgggtgataatgtttggagagatattgattgtttcccggtggaattggtgtatcatcgttctttaatgtttgcgagagataaagttta 6954808  T
Q  275 tttgaaaagtagtgttagttggtgtgttcgttgcagatattattgtcatttgaaaaatcttattgttgaacaatttgtgatgatctcacttgatttgggg 374  Q
    |||||| | |||| ||| ||||  ||| |||  | ||||||||||||||||||| |||||||  |||||| |||||||||| |||||||||||| || ||    
T  6954807 tttgaataatagtattaattgggttgtccgtcaccgatattattgtcatttgaagaatcttacagttgaaaaatttgtgatcatctcacttgatatgagg 6954708  T
Q  375 acagagacatatacacaattgttgctccctcgatgttgtgatgaagagctacataatgttccaactctttctgtattgatggattgcctctatttttctt 474  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||     || | |||||||||||||||||||||||||||||| ||| ||||    
T  6954707 acagagacatatacacagttgttgctcccccgatgttgtgatgaagagctaaccggtgctgcaactctttctgtattgatggattgcctctgtttatctt 6954608  T
Q  475 atgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatacgaatcttct 574  Q
    ||||||  || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| | ||| ||||||    
T  6954607 atgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttccgattcttct 6954508  T
Q  575 aaacgattttaaaactcaggagttatataatgattcattatttc 618  Q
    ||| |||||||||| |||||||||  |||| |||||||||||||    
T  6954507 aaaagattttaaaagtcaggagttcaataacgattcattatttc 6954464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 345 - 563
Target Start/End: Original strand, 20770502 - 20770720
Alignment:
Q  345 caatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaagagctacataatgttccaactcttt 444  Q
    ||||||||||| ||||| |||||||||| || ||||||||| | ||| ||||| ||||||| |||||||||||||   | || | ||  || ||||||||    
T  20770502 caatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatgaatttccacttgataatcaaactcttt 20770601  T
Q  445 ctgtattgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactca 544  Q
     ||| |||||||||||  | | ||||||| |||||  ||| |||||  |||||||||| ||||||||||||||||||||| ||||||| || |||| |||    
T  20770602 gtgtgttgatggattgtatttgtttttctcatgatgttaaaaaaacttattttgttatatggcaaatgaaggaatttggaattgaagagtcatggattca 20770701  T
Q  545 attccttaaaattagttat 563  Q
    |||||||||||||||||||    
T  20770702 attccttaaaattagttat 20770720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 504 - 573
Target Start/End: Original strand, 17369675 - 17369744
Alignment:
Q  504 tggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatacgaatcttc 573  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||  ||||||||    
T  17369675 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttc 17369744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 559
Target Start/End: Original strand, 14749393 - 14749463
Alignment:
Q  489 acccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattag 559  Q
    |||||||||||| | |||   |||| ||||||||||||| |||| ||||||||||||||||| ||||||||    
T  14749393 acccattttgttttatggaggatgatggaatttggagttcaagagtcttggactcaattcctcaaaattag 14749463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 561
Target Start/End: Complemental strand, 24254506 - 24254428
Alignment:
Q  483 aagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 561  Q
    |||| ||| ||||||||||| ||||| |||  |||||||||||| ||| ||||||||||||||||| | ||||| ||||    
T  24254506 aagagaactcattttgttatatggcagatgtcggaatttggagtcgaacaatcttggactcaattcatcaaaatcagtt 24254428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 420
Target Start/End: Complemental strand, 24950344 - 24950272
Alignment:
Q  348 tttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaag 420  Q
    |||| ||| ||||||||||||| | ||||||||||||| | ||||||||||| ||||||| ||| | ||||||    
T  24950344 tttgcgatcatctcacttgattcgaggacagagacatacagacaattgttgccccctcgaggttctaatgaag 24950272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 557
Target Start/End: Complemental strand, 24950214 - 24950150
Alignment:
Q  493 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaatt 557  Q
    |||||||||| ||| | |||| | | ||||||||||| || ||||||| ||||||||||||||||    
T  24950214 attttgttatatggaagatgatgaagtttggagttgaggagtcttggagtcaattccttaaaatt 24950150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 58)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 588
Target Start/End: Complemental strand, 1986500 - 1985930
Alignment:
Q  18 acaaaatctgaaacattggtgtcttttcgcaactatcccaagcccaggaaaaatgtttgcaacttcacgtttggttatgatatttcaatagacacttaca 117  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| ||||||||||||||| ||||| |||||||||||    
T  1986500 acaaaatatgaagcattggtgtcttttcgcaactatcccaagcccaagaaaaatatttgcaagttcgcgtttggttatgataattcaacagacacttaca 1986401  T
Q  118 agattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacggcagtaagagtttttactttgggtgataatgattggagagacattgattg 217  Q
    ||||| |||| ||||||||||||||||||| |   || || ||| |||| || ||||||||||||||||||||| |||||||||||||||| ||||||||    
T  1986400 agattttgttgttatgtttgaaaagggatggt---gagctgattacaaccgccgtaagagtttttactttgggttataatgattggagagaaattgattg 1986304  T
Q  218 tttgcctgtggtattggtgcgtcatccttttggt---aagtatgtgcgaaatggcgtttatttgaaaagtagtgttagttggtgtgttcgttgcagatat 314  Q
    ||||||||||||| ||||| ||||||||||||||   ||||||||| ||||||| ||||||||||| |||||| |||||||||||||||||  | |||||    
T  1986303 tttgcctgtggtagtggtgtgtcatccttttggtggtaagtatgtgagaaatggtgtttatttgaatagtagtattagttggtgtgttcgtcaccgatat 1986204  T
Q  315 tattgtcatttgaaaaatcttattgttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtg 414  Q
     ||||||||||||| |||||||  ||||||||| |||| || ||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  1986203 aattgtcatttgaagaatcttacagttgaacaacttgtaattatctcacttgatttggggacagagagatatacacagttgttgctccctcgatattgtg 1986104  T
Q  415 atgaagagctacataatgttccaactctttctgtattgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaa 514  Q
    ||||||| ||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||| | |||||||||||    
T  1986103 atgaagatctacatggtgttccaactctttctgtgttgatggattgcctctatttttcttatgatttcaagaaaacccattttgttctttggcaaatgaa 1986004  T
Q  515 ggaatttggagttgaagaatcttggactcaattccttaaaattagttatacgaatcttctaaacgattttaaaa 588  Q
    ||||||||| |||||||||||||||||||||||  ||||||||||||||| |||||||||| | ||| ||||||    
T  1986003 ggaatttggcgttgaagaatcttggactcaattgtttaaaattagttatatgaatcttctagaagatattaaaa 1985930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 87 - 573
Target Start/End: Complemental strand, 15572386 - 15571885
Alignment:
Q  87 tttggttatgatatttcaatagacacttacaagattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacggcagtaagagtttttactt 186  Q
    ||||||||||||| |||||  |||||||||||| | ||||| ||||||| ||||||||||| | ||||| ||||| || | |  |||||||| |||||||    
T  15572386 tttggttatgataattcaaccgacacttacaaggtggtgttgttatgttggaaaagggatggtggcgacgttattacatccgtggtaagagtatttactt 15572287  T
Q  187 tgggtgataatgattggagagacattgattgtttgcctgtggtattggtgcgtcatccttttggtaagtatgtgcgaa--atggcgtttatttgaaaagt 284  Q
    |||||||||| | ||||||||| ||||||||||| |||| |||||   ||| ||||   ||  ||   | | |||  |  |||| ||||||||||| | |    
T  15572286 tgggtgataacgtttggagagatattgattgttttcctggggtatccttgcatcatagctt--gtctttttttgctgaggatggagtttatttgaacaat 15572189  T
Q  285 agtgttagttggtgtgttcgttgcagatattattgtcatttgaaaaatcttattgttgaacaatttgtgatgatctcacttgatttggggacagagacat 384  Q
    |||  || ||||| ||  |||    ||||||||||||||||||| |||||||   |||||||||||||||| ||||| ||||||||||||||||| ||||    
T  15572188 agtactaattggtttgcccgtcaacgatattattgtcatttgaagaatcttacgattgaacaatttgtgataatctcgcttgatttggggacagaaacat 15572089  T
Q  385 atacacaattgttgctccctcgatgttgtgatgaagagctacat-----aatgt----tccaact------ctttctgtattgatggattgcctctattt 469  Q
    ||| ||||| | |||| ||||||||||||||||||||  || ||     ||| |     | ||||      |||||||| || |||||||| || | |||    
T  15572088 atagacaatcgatgctacctcgatgttgtgatgaagacttatattctcaaatttcttggcaaactctttatctttctgtgtttatggattgtctttgttt 15571989  T
Q  470 ttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatacgaat 569  Q
    |||||||||||  |||  |||||||||||| || |||||||||| ||| |||||||||||||| ||||||  |||||||| ||||||||||||| | |||    
T  15571988 ttcttatgatttcaagggaacccattttgtcatgtggcaaatgagggagtttggagttgaagagtcttgggttcaattccataaaattagttattcaaat 15571889  T
Q  570 cttc 573  Q
    ||||    
T  15571888 cttc 15571885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 340 - 563
Target Start/End: Complemental strand, 13417146 - 13416911
Alignment:
Q  340 ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaagagctacataatgttccaa- 438  Q
    |||||||||||||||| |||||  |||| |||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||   ||  |||||     
T  13417146 ttgaacaatttgtgattatctcggttgagttggggactgagacatatacacagttgttgctacctcgatgttgtgaggaagagctacgcgatcctccaat 13417047  T
Q  439 -----------ctctttctgtattgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagtt 527  Q
               |||||||| | ||||  ||||| || | |||||||||||||| |||||||||| ||||| | || ||||||||||||||||||||||||    
T  13417046 acttcctcctactctttctatgttgaatgattgtctttgtttttcttatgattttaagaaaacctattttatcatatggcaaatgaaggaatttggagtt 13416947  T
Q  528 gaagaatcttggactcaattccttaaaattagttat 563  Q
    ||||| ||||||  | ||||| ||||||||||||||    
T  13416946 gaagagtcttgggttgaattcgttaaaattagttat 13416911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 440 - 573
Target Start/End: Complemental strand, 18514910 - 18514777
Alignment:
Q  440 tctttctgtattgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttgg 539  Q
    ||||||||| || ||||||||| | | ||||||||||||||  ||||||| ||||||  |||| ||| ||||| | ||||||||||||||| | ||||||    
T  18514910 tctttctgttttaatggattgcatgtgtttttcttatgatttcaagaaaagccatttcattatatggaaaatggacgaatttggagttgaaaactcttgg 18514811  T
Q  540 actcaattccttaaaattagttatacgaatcttc 573  Q
    ||||||||||||||||||||||||| ||||||||    
T  18514810 actcaattccttaaaattagttatatgaatcttc 18514777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 492 - 573
Target Start/End: Original strand, 14076677 - 14076758
Alignment:
Q  492 cattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatacgaatcttc 573  Q
    ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||  ||||||||    
T  14076677 catttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttc 14076758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 492 - 573
Target Start/End: Original strand, 14386705 - 14386786
Alignment:
Q  492 cattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatacgaatcttc 573  Q
    ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||  ||||||||    
T  14386705 catttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttc 14386786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 340 - 416
Target Start/End: Original strand, 14076542 - 14076618
Alignment:
Q  340 ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgat 416  Q
    |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||    
T  14076542 ttgagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgttactccctccatgttgtgat 14076618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 340 - 416
Target Start/End: Original strand, 14386570 - 14386646
Alignment:
Q  340 ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgat 416  Q
    |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||    
T  14386570 ttgagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgttactccctccatgttgtgat 14386646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 445 - 575
Target Start/End: Complemental strand, 19344693 - 19344563
Alignment:
Q  445 ctgtattgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactca 544  Q
    ||||||||||||| ||||| | ||||||| |  ||   ||||| || ||||||||||| ||||| |||| |||||||||||||||| |||||||||||||    
T  19344693 ctgtattgatggactgcctttgtttttctcacaatctcaagaacactcattttgttatatggcagatgatggaatttggagttgaacaatcttggactca 19344594  T
Q  545 attccttaaaattagttatacgaatcttcta 575  Q
    ||| ||||||||||||| |  ||||||||||    
T  19344593 atttcttaaaattagttttcagaatcttcta 19344563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 494 - 563
Target Start/End: Complemental strand, 660916 - 660847
Alignment:
Q  494 ttttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    ||||||||| ||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  660916 ttttgttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttat 660847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 467 - 562
Target Start/End: Complemental strand, 19604559 - 19604464
Alignment:
Q  467 tttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtta 562  Q
    ||||||| |||||| | | ||||| || ||| |||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  19604559 tttttctcatgattttcataaaactcactttattatatggcagatgaaggaatttggagttgaagactcctggactcaattccttaaaattagtta 19604464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 483 - 556
Target Start/End: Original strand, 22021382 - 22021455
Alignment:
Q  483 aagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaat 556  Q
    |||||||||||||| ||||| ||||| |||| ||| | ||||||||||||||||||||||||||| ||||||||    
T  22021382 aagaaaacccatttggttatatggcagatgatggattatggagttgaagaatcttggactcaattacttaaaat 22021455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 455 - 563
Target Start/End: Complemental strand, 6864914 - 6864807
Alignment:
Q  455 ggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaa 554  Q
    |||||| |||||||||||| ||||||  ||  |||| ||||| || || |||  |||||||||||||||||||||||| ||||||||||| |||||||||    
T  6864914 ggattgtctctatttttctcatgatttcaaacaaactcattt-gtaatatggttaatgaaggaatttggagttgaagagtcttggactcagttccttaaa 6864816  T
Q  555 attagttat 563  Q
    | |||||||    
T  6864815 actagttat 6864807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 478 - 562
Target Start/End: Original strand, 29867221 - 29867305
Alignment:
Q  478 attctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtta 562  Q
    |||||||| ||||  ||||| |||| |||||||||||| |||| || |||||||| ||||||||||||||||||| |||||||||    
T  29867221 attctaaggaaactgattttattatatggcaaatgaagaaattcggggttgaagattcttggactcaattccttagaattagtta 29867305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 487 - 561
Target Start/End: Original strand, 22028622 - 22028696
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 561  Q
    |||||||||||||||| ||| |||||| ||| | |||||||||||| |||||||||||||| ||||| |||||||    
T  22028622 aaacccattttgttatatggaaaatgacggattatggagttgaagagtcttggactcaattacttaagattagtt 22028696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 493 - 563
Target Start/End: Complemental strand, 29454173 - 29454103
Alignment:
Q  493 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    |||||||||| ||||  |||| | |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  29454173 attttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagttat 29454103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 504 - 562
Target Start/End: Original strand, 29881267 - 29881325
Alignment:
Q  504 tggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtta 562  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||    
T  29881267 tggcaaatgaagaaatttggggttgaagattcttggactcaattccttagaattagtta 29881325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 493 - 561
Target Start/End: Complemental strand, 12819986 - 12819918
Alignment:
Q  493 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 561  Q
    |||||||| | ||||| |||| |||||||||||||||| |||| |||||||||||||||||||| ||||    
T  12819986 attttgttgtatggcagatgacggaatttggagttgaacaatcctggactcaattccttaaaatcagtt 12819918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 489 - 561
Target Start/End: Complemental strand, 19351143 - 19351071
Alignment:
Q  489 acccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 561  Q
    |||||||||||| | ||||| |||| ||||||||||||||| || |||||||||| |||||| ||||||||||    
T  19351143 acccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagtt 19351071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 467 - 563
Target Start/End: Complemental strand, 20058153 - 20058057
Alignment:
Q  467 tttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    |||||| ||||||| |||| |||  ||||||||||| ||| ||||| |||||||  |||||||||| ||||||  |||||| |||||||||||||||    
T  20058153 tttttcgtatgattttaagcaaagtcattttgttatatggaaaatggaggaattcagagttgaagagtcttggtgtcaatttcttaaaattagttat 20058057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 487 - 563
Target Start/End: Original strand, 20352089 - 20352165
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    |||| |||||||| || ||| ||||||||||||||||||||||||| || ||||||||| |  ||||||||||||||    
T  20352089 aaactcattttgtaatatgggaaatgaaggaatttggagttgaagattcatggactcaactttttaaaattagttat 20352165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 487 - 563
Target Start/End: Original strand, 22063636 - 22063712
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    |||| ||||||||||| ||||||||||||||||||||| || |||| ||||||||||| ||  | ||||||||||||    
T  22063636 aaactcattttgttatatggcaaatgaaggaatttggatttcaagagtcttggactcagttattcaaaattagttat 22063712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 467 - 563
Target Start/End: Original strand, 22100467 - 22100563
Alignment:
Q  467 tttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    ||||||| ||||||  || ||||| |||||| |||| |||||||||||| ||||||||||| |||| ||||||||||| ||  | ||||||||||||    
T  22100467 tttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagttat 22100563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 499 - 563
Target Start/End: Original strand, 29874517 - 29874581
Alignment:
Q  499 ttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    |||| |||||||||||| ||||||| |||||||| |||||||||| ||| |||||||||||||||    
T  29874517 ttatatggcaaatgaagaaatttggggttgaagattcttggactccattacttaaaattagttat 29874581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 493 - 576
Target Start/End: Complemental strand, 29922063 - 29921980
Alignment:
Q  493 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatacgaatcttctaa 576  Q
    |||||||||| ||||| |||||| ||||||| | |||||| |||||| |||||||||||| ||||||||||   ||||||||||    
T  29922063 attttgttatatggcagatgaagaaatttggggatgaagattcttggtctcaattccttagaattagttatcaaaatcttctaa 29921980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 340 - 426
Target Start/End: Complemental strand, 18515031 - 18514945
Alignment:
Q  340 ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaagagctac 426  Q
    ||||||||| ||| ||  |||| |||||||||  |||||||||||||||||| || ||||||||||||| |||| || |||||||||    
T  18515031 ttgaacaatatgttattgtctcgcttgatttgaagacagagacatatacacagttcttgctccctcgatcttgtaataaagagctac 18514945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 540
Target Start/End: Original strand, 9807814 - 9807871
Alignment:
Q  483 aagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttgga 540  Q
    ||||||||| |||| ||||| ||||| ||||||||||||||||||||||| |||||||    
T  9807814 aagaaaaccgatttcgttatatggcagatgaaggaatttggagttgaagagtcttgga 9807871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 489 - 562
Target Start/End: Complemental strand, 18952979 - 18952906
Alignment:
Q  489 acccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtta 562  Q
    ||||||||| | || ||||| ||||||||||||||||||||  | || |||||||| |||||||||||||||||    
T  18952979 acccattttatcatatggcagatgaaggaatttggagttgacaagtcatggactcagttccttaaaattagtta 18952906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 489 - 562
Target Start/End: Complemental strand, 18983026 - 18982953
Alignment:
Q  489 acccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtta 562  Q
    ||||||||| | || ||||| ||||||||||||||||||||  | || |||||||| |||||||||||||||||    
T  18983026 acccattttatcatatggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagtta 18982953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 489 - 562
Target Start/End: Complemental strand, 18997672 - 18997599
Alignment:
Q  489 acccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtta 562  Q
    ||||||||| | || ||||| ||||||||||||||||||||  | || |||||||| |||||||||||||||||    
T  18997672 acccattttatcatatggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagtta 18997599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 486 - 562
Target Start/End: Original strand, 20338917 - 20338993
Alignment:
Q  486 aaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtta 562  Q
    ||||| |||||||| || ||| ||||||||||||| ||||||||||| |||||||||||| || || |||| |||||    
T  20338917 aaaactcattttgtaatatggaaaatgaaggaattaggagttgaagattcttggactcaactctttcaaatcagtta 20338993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 352 - 420
Target Start/End: Original strand, 24385051 - 24385119
Alignment:
Q  352 tgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaag 420  Q
    |||| ||||||||| ||||||||||||||| ||| ||||||||||||| ||||| | ||| ||||||||    
T  24385051 tgatcatctcacttaatttggggacagagaaatacacacaattgttgccccctcaaggttctgatgaag 24385119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 492 - 571
Target Start/End: Original strand, 22070110 - 22070189
Alignment:
Q  492 cattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatacgaatct 571  Q
    |||||| |||| |||||||||||| ||||||||||| |||| ||||||||||  ||  | ||||||||||||| ||||||    
T  22070110 cattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaaattagttataagaatct 22070189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 24391269 - 24391316
Alignment:
Q  357 atctcacttgatttggggacagagacatatacacaattgttgctccct 404  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||||    
T  24391269 atctcacttgatttggggatagagacatacacacaattgttgccccct 24391316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 468 - 559
Target Start/End: Original strand, 36263028 - 36263119
Alignment:
Q  468 ttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattag 559  Q
    |||||| |||| | |||||||||  |||||||||| ||| | ||| | ||||||||||||||||| |||||||||||| || ||||| ||||    
T  36263028 ttttctaatgactataagaaaactgattttgttatatggaagatggaagaatttggagttgaagagtcttggactcaactcattaaagttag 36263119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 561
Target Start/End: Complemental strand, 19326065 - 19325987
Alignment:
Q  483 aagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 561  Q
    |||| ||| ||||||||||| ||||| |||  |||||||||||| ||| ||||||||||||||||| | ||||| ||||    
T  19326065 aagagaactcattttgttatatggcatatgtcggaatttggagtagaacaatcttggactcaattcatcaaaatcagtt 19325987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 563
Target Start/End: Complemental strand, 19637287 - 19637217
Alignment:
Q  493 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    ||||| |||| |||||||||||||||||||||||| |||| || |||| ||   |||||||||||||||||    
T  19637287 attttattatatggcaaatgaaggaatttggagttcaagagtcgtggattcggctccttaaaattagttat 19637217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 573
Target Start/End: Complemental strand, 20374579 - 20374493
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatacgaatcttc 573  Q
    |||| |||||||| || ||| ||||||||||||||||||||| ||| || |||| |||| |  |||||||||||||||  |||||||    
T  20374579 aaactcattttgtaatatgggaaatgaaggaatttggagttggagattcatggattcaactttttaaaattagttataataatcttc 20374493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 563
Target Start/End: Original strand, 29859454 - 29859524
Alignment:
Q  493 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    |||| ||||| ||| | |||||| |||||||||||||||| |||||||| | ||| |||||||||||||||    
T  29859454 atttcgttatatgggagatgaagaaatttggagttgaagattcttggaccccatttcttaaaattagttat 29859524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 493 - 562
Target Start/End: Original strand, 29106814 - 29106883
Alignment:
Q  493 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtta 562  Q
    |||||||| | ||||| |||||| ||||||| |||||||| |||||||||||| |  |||||||||||||    
T  29106814 attttgttgtatggcagatgaagaaatttggggttgaagagtcttggactcaactttttaaaattagtta 29106883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 478 - 563
Target Start/End: Complemental strand, 29431086 - 29431001
Alignment:
Q  478 attctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    |||||||| | ||| |||||||||| ||||  |||| | ||||||| | | |||| |||||||| |||||||||||||||||||||    
T  29431086 attctaaggacacctattttgttatatggcggatgatgaaatttggggctaaagattcttggacccaattccttaaaattagttat 29431001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 487 - 556
Target Start/End: Complemental strand, 29445732 - 29445663
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaat 556  Q
    ||||| ||||| |||| ||||| ||||||||||| || |||||||| |||||||||||||| || |||||    
T  29445732 aaaccgattttcttatatggcagatgaaggaattaggggttgaagactcttggactcaatttctaaaaat 29445663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 547
Target Start/End: Original strand, 15443922 - 15444018
Alignment:
Q  451 tgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaatt 547  Q
    |||||||||| || | ||||||||||||||| || | |||    |||||| | ||||| |||||||| | |||||||||||| ||||||||||||||    
T  15443922 tgatggattgtctttgtttttcttatgattccaatacaactggatttgttttatggcatatgaaggagtatggagttgaagagtcttggactcaatt 15444018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 561
Target Start/End: Original strand, 19357906 - 19357978
Alignment:
Q  489 acccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 561  Q
    |||||||| ||| | ||| | |||| ||||||||||||| |||| ||||||||||||||| | ||||||||||    
T  19357906 acccatttcgttttatggaagatgatggaatttggagttcaagagtcttggactcaattcttaaaaattagtt 19357978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 493 - 561
Target Start/End: Original strand, 19722018 - 19722086
Alignment:
Q  493 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 561  Q
    |||||||| | ||| | |||| ||||||||||||| |||| ||||||||||||||||| ||||| ||||    
T  19722018 attttgttttatggaagatgatggaatttggagttcaagattcttggactcaattcctcaaaatcagtt 19722086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 543
Target Start/End: Original strand, 22080862 - 22080918
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactc 543  Q
    |||| |||||| |||| |||||||||||| ||||||||||| |||| ||||||||||    
T  22080862 aaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactc 22080918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 493 - 561
Target Start/End: Original strand, 29899374 - 29899442
Alignment:
Q  493 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 561  Q
    |||||||||| ||||| |||||| ||||||| |||||||| || |||||||||||  | ||||||||||    
T  29899374 attttgttatatggcagatgaagaaatttggggttgaagagtcctggactcaatttttaaaaattagtt 29899442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 563
Target Start/End: Complemental strand, 19645689 - 19645630
Alignment:
Q  504 tggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    ||||| ||||||||||||||| ||||||| || |||||||  || |||||||||||||||    
T  19645689 tggcagatgaaggaatttggaattgaagagtcatggactctgttacttaaaattagttat 19645630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 559
Target Start/End: Original strand, 36260228 - 36260319
Alignment:
Q  468 ttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattag 559  Q
    |||||| ||||||  ||||||||  |||||||||| ||| | ||| | ||||||||||||||||| ||||||| |||| |  ||||||||||    
T  36260228 ttttctaatgattacaagaaaactgattttgttatatggaagatggaagaatttggagttgaagagtcttggattcaacttattaaaattag 36260319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 559
Target Start/End: Complemental strand, 13888172 - 13888098
Alignment:
Q  485 gaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattag 559  Q
    ||||||| |||||||||| ||| ||||||   |||||||||  ||| | ||||||||||||||||||||| ||||    
T  13888172 gaaaaccaattttgttatatggaaaatgacaaaatttggagacgaaaagtcttggactcaattccttaaatttag 13888098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 16839613 - 16839559
Alignment:
Q  331 atcttattgttgaacaatttgtgatgatctcacttgatttggggacagagacata 385  Q
    |||||| |||||| ||||||||||| || |||||||||||||| || ||||||||    
T  16839613 atcttactgttgagcaatttgtgattatttcacttgatttgggcacggagacata 16839559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 515 - 561
Target Start/End: Original strand, 19374778 - 19374824
Alignment:
Q  515 ggaatttggagttgaagaatcttggactcaattccttaaaattagtt 561  Q
    ||||||||||||||||   |||||||||||||| |||||||||||||    
T  19374778 ggaatttggagttgaacggtcttggactcaatttcttaaaattagtt 19374824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 559
Target Start/End: Complemental strand, 21218778 - 21218712
Alignment:
Q  493 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattag 559  Q
    |||| ||||| |||||||||| ||||||||||| |||  | ||||||||||||||||| ||| ||||    
T  21218778 atttggttatatggcaaatgacggaatttggagatgataagtcttggactcaattcctcaaatttag 21218712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 495 - 573
Target Start/End: Original strand, 24002201 - 24002279
Alignment:
Q  495 tttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatacgaatcttc 573  Q
    |||||| | ||||| |||||||| |  |||||| |||| |||||||||||||| ||||| |||||||||  ||||||||    
T  24002201 tttgttttatggcatatgaaggagtacggagttcaagagtcttggactcaattacttaagattagttatcagaatcttc 24002279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #55
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 547
Target Start/End: Original strand, 26256732 - 26256829
Alignment:
Q  450 ttgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaatt 547  Q
    |||||||| ||||| | ||||||| ||||| | ||| |||   |||||||| | ||||| |||||||| | ||||||| |||| ||||||||||||||    
T  26256732 ttgatggaatgcctttgtttttctcatgataccaaggaaaatgattttgttttatggcagatgaaggagtatggagttcaagagtcttggactcaatt 26256829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #56
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 547
Target Start/End: Original strand, 15508704 - 15508800
Alignment:
Q  451 tgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaatt 547  Q
    |||||||||| || | ||||||||||||||| || |||||    |||||| | ||||| |||||||| | |||||||||| | ||| ||||||||||    
T  15508704 tgatggattgtctttgtttttcttatgattccaataaaactggatttgttttttggcatatgaaggagtatggagttgaatagtctaggactcaatt 15508800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #57
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 540
Target Start/End: Complemental strand, 20133376 - 20133340
Alignment:
Q  504 tggcaaatgaaggaatttggagttgaagaatcttgga 540  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  20133376 tggcaaatgaaagaatttggagttgaagattcttgga 20133340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #58
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 540
Target Start/End: Complemental strand, 20140877 - 20140841
Alignment:
Q  504 tggcaaatgaaggaatttggagttgaagaatcttgga 540  Q
    ||||||||||||||||||||||||||| | |||||||    
T  20140877 tggcaaatgaaggaatttggagttgaaaattcttgga 20140841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 450 - 572
Target Start/End: Original strand, 53774797 - 53774919
Alignment:
Q  450 ttgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattcc 549  Q
    |||||||||||  | | |||||||||||||| |||  |||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  53774797 ttgatggattgtatttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattcc 53774896  T
Q  550 ttaaaattagttatacgaatctt 572  Q
    ||||||||||||||  |||||||    
T  53774897 ttaaaattagttatcagaatctt 53774919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 563
Target Start/End: Original strand, 3565701 - 3565814
Alignment:
Q  450 ttgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattcc 549  Q
    |||| ||| ||||| | ||||||||||  || |||||||||| ||||| |||| ||||| |||||||||||||| |||||||| |||||||||||||| |    
T  3565701 ttgagggactgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttc 3565800  T
Q  550 ttaaaattagttat 563  Q
    ||||||||||||||    
T  3565801 ttaaaattagttat 3565814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 487 - 563
Target Start/End: Complemental strand, 11971058 - 11970982
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||    
T  11971058 aaactcattttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagttat 11970982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 487 - 563
Target Start/End: Original strand, 3557720 - 3557796
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    ||||| ||||| |||| ||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||    
T  3557720 aaaccgattttattatatggcatatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagttat 3557796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 487 - 563
Target Start/End: Complemental strand, 11981759 - 11981683
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||| || ||||||| ||| |||||||||||||||    
T  11981759 aaactcattttgttatatggcaaatgaaggaatttggagtggaagagtcctggactcgatttcttaaaattagttat 11981683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 455 - 563
Target Start/End: Complemental strand, 3561066 - 3560958
Alignment:
Q  455 ggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaa 554  Q
    ||||||||| | ||||||||||  ||  ||| ||||| ||||| |||| ||||| |||||  ||||||| |||||||| |||||||||||||| ||||||    
T  3561066 ggattgcctttgtttttcttattcttacaaggaaaccgattttattatttggcagatgaaaaaatttggggttgaagagtcttggactcaatttcttaaa 3560967  T
Q  555 attagttat 563  Q
    |||||||||    
T  3560966 attagttat 3560958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 450 - 563
Target Start/End: Complemental strand, 8443567 - 8443454
Alignment:
Q  450 ttgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattcc 549  Q
    |||||||| || || | ||||||||||||||  |||| ||| |||| |||||| ||||| |||||||| ||||||||| | || ||||||| ||||||      
T  8443567 ttgatggactgtctttgtttttcttatgatttcaagagaactcattatgttatttggcagatgaaggattttggagttcacgagtcttggattcaattat 8443468  T
Q  550 ttaaaattagttat 563  Q
    ||||||||||||||    
T  8443467 ttaaaattagttat 8443454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 486 - 559
Target Start/End: Original strand, 837769 - 837842
Alignment:
Q  486 aaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattag 559  Q
    ||||||||||||||||| |||||||||||| | ||||| ||| |||| ||||||| ||||||  ||||||||||    
T  837769 aaaacccattttgttatatggcaaatgaagaattttggtgttcaagagtcttggattcaattatttaaaattag 837842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 492 - 558
Target Start/End: Original strand, 35767017 - 35767083
Alignment:
Q  492 cattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaatta 558  Q
    ||||||||||| ||| | ||| | ||||||||||||||||| ||||||| |||| ||||||||||||    
T  35767017 cattttgttatatggaagatggaagaatttggagttgaagagtcttggattcaactccttaaaatta 35767083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 487 - 564
Target Start/End: Original strand, 6372439 - 6372516
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttata 564  Q
    ||||||||||| |||| |||||||||||||| | ||||||| |||| |||| || ||||||   ||||||||||||||    
T  6372439 aaacccattttattatatggcaaatgaaggattctggagttcaagagtcttagattcaattatataaaattagttata 6372516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 493 - 562
Target Start/End: Complemental strand, 53430169 - 53430100
Alignment:
Q  493 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtta 562  Q
    ||||||| || ||||| |||||| ||| ||| |  ||||| |||||||||||||||||||||||||||||    
T  53430169 attttgtcatatggcagatgaagaaatatggggccgaagattcttggactcaattccttaaaattagtta 53430100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 53774701 - 53774750
Alignment:
Q  342 gaacaatttgtgatgatctcacttgatttggggacagagacatatacaca 391  Q
    |||||||||||||| || || |||||||||| ||||||||||||||||||    
T  53774701 gaacaatttgtgattatttcgcttgatttggagacagagacatatacaca 53774750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 563
Target Start/End: Complemental strand, 1686349 - 1686285
Alignment:
Q  499 ttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    |||| ||||| |||||||||||||| ||||| || |||||||||||||| ||||||  |||||||    
T  1686349 ttatatggcagatgaaggaatttggcgttgacgagtcttggactcaatttcttaaatatagttat 1686285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 562
Target Start/End: Original strand, 6392815 - 6392893
Alignment:
Q  487 aaacccattttgttatc---tggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtta 562  Q
    ||||||||||||| |||   |||||||||||||| ||||||||| | || ||||||| ||||||  |||||||||||||    
T  6392815 aaacccattttgtcatcatatggcaaatgaaggattttggagttcacgagtcttggattcaattatttaaaattagtta 6392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 517 - 561
Target Start/End: Original strand, 53790577 - 53790621
Alignment:
Q  517 aatttggagttgaagaatcttggactcaattccttaaaattagtt 561  Q
    |||||||| ||||| |||||||||||||||| |||||||||||||    
T  53790577 aatttggatttgaacaatcttggactcaatttcttaaaattagtt 53790621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 563
Target Start/End: Original strand, 6113090 - 6113149
Alignment:
Q  504 tggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    |||| ||||| ||||||||||||| |||| ||||||||||| ||||||  ||||||||||    
T  6113090 tggcgaatgatggaatttggagttaaagagtcttggactcagttccttcgaattagttat 6113149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 525
Target Start/End: Original strand, 10475164 - 10475239
Alignment:
Q  450 ttgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggag 525  Q
    ||||||||||| || | ||||| ||||||||   | || |||||||||||||| |||||||||||||| |||||||    
T  10475164 ttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaaggattttggag 10475239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 523
Target Start/End: Original strand, 10464226 - 10464299
Alignment:
Q  450 ttgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttgg 523  Q
    ||||||||||| || | ||||| ||||||||   | || |||||||||||||| |||||||||||||| |||||    
T  10464226 ttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaaggattttgg 10464299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 569
Target Start/End: Original strand, 10468042 - 10468118
Alignment:
Q  493 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatacgaat 569  Q
    |||||||||| |||||||||||||| ||||||||| |    ||||||| ||||||  ||||||||| ||||| ||||    
T  10468042 attttgttatatggcaaatgaaggattttggagttcagtcgtcttggattcaattatttaaaattacttataagaat 10468118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 8e-32; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 340 - 573
Target Start/End: Complemental strand, 18965056 - 18964820
Alignment:
Q  340 ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaagagctaca---taatgttcc 436  Q
    |||| ||||||||||| |||||||||||| ||||||  ||||||| |||||| ||||| ||||||| ||||||||||||   || ||    | ||  |||    
T  18965056 ttgagcaatttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtgatgagttgcaaccgcttgatactcc 18964957  T
Q  437 aactctttctgtattgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatct 536  Q
     || |||| |||||||||| ||||||| | |||| || |||||  | | ||||| |||||  |||| ||||||||||||||||||||||||||||| |||    
T  18964956 gaccctttgtgtattgatgaattgcctttgttttactcatgatcttgaaaaaactcatttcattatatggcaaatgaaggaatttggagttgaagactct 18964857  T
Q  537 tggactcaattccttaaaattagttatacgaatcttc 573  Q
    ||||||||||| ||||||||| |||||  ||||||||    
T  18964856 tggactcaatttcttaaaatttgttatcagaatcttc 18964820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 29647633 - 29647744
Alignment:
Q  450 ttgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattcc 549  Q
    |||||||||||||| | ||||||| |  ||  ||||||||| ||||||||||| ||||||||||  ||||||||| ||||| ||||||||||||||||||    
T  29647633 ttgatggattgcctttgtttttctcaccatcttaagaaaactcattttgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattcc 29647732  T
Q  550 ttaaaattagtt 561  Q
    ||||||||||||    
T  29647733 ttaaaattagtt 29647744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 487 - 561
Target Start/End: Complemental strand, 29597628 - 29597554
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 561  Q
    |||| ||||||||||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||    
T  29597628 aaactcattttgttatatggcaaatgattgaatttggagttgaacaatcttggactcaattccttaaaattagtt 29597554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 482 - 561
Target Start/End: Original strand, 29642348 - 29642427
Alignment:
Q  482 taagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 561  Q
    ||||||||| ||||| ||||| ||||||||||  ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  29642348 taagaaaactcatttcgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattagtt 29642427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 487 - 562
Target Start/End: Complemental strand, 24330975 - 24330900
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtta 562  Q
    ||||| |||||||||| ||| | |||||||||||||| |||||||| |||||||||||| |||||||| |||||||    
T  24330975 aaaccgattttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaaagttagtta 24330900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 544
Target Start/End: Original strand, 23086784 - 23086833
Alignment:
Q  495 tttgttatctggcaaatgaaggaatttggagttgaagaatcttggactca 544  Q
    |||||||| ||||| |||||||| ||||||||| |||| |||||||||||    
T  23086784 tttgttatatggcagatgaaggagtttggagttcaagagtcttggactca 23086833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 556
Target Start/End: Complemental strand, 28763980 - 28763912
Alignment:
Q  488 aacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaat 556  Q
    ||||||||||||||| ||| | |||| | |||||||||||||| | ||||||| || |||||| |||||    
T  28763980 aacccattttgttatatggaagatgacgcaatttggagttgaaaagtcttggagtcgattcctcaaaat 28763912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 8e-32; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 467 - 573
Target Start/End: Original strand, 14514874 - 14514980
Alignment:
Q  467 tttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatacg 566  Q
    ||||||||||||||  |||||||||||| ||||||| ||| ||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  14514874 tttttcttatgatttcaagaaaacccatcttgttatatggaaaatggatgaatttggagttgaagattcttggactcaattccttaaaattagttatatg 14514973  T
Q  567 aatcttc 573  Q
    |||||||    
T  14514974 aatcttc 14514980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 487 - 561
Target Start/End: Complemental strand, 18908885 - 18908811
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 561  Q
    |||||||||||||||| ||| | |||| ||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  18908885 aaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 18908811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 487 - 561
Target Start/End: Complemental strand, 18920841 - 18920767
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 561  Q
    |||||||||||||||| ||| | |||| ||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  18920841 aaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 18920767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 488 - 561
Target Start/End: Complemental strand, 18913632 - 18913559
Alignment:
Q  488 aacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 561  Q
    ||||||||||||||| ||| | |||| ||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  18913632 aacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 18913559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 488 - 563
Target Start/End: Original strand, 554471 - 554546
Alignment:
Q  488 aacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    ||||||| || |||| ||||||||||  |||| ||||||| |||| |||||||||||||| |||||||||||||||    
T  554471 aacccatcttattatatggcaaatgatagaatatggagttaaagagtcttggactcaattacttaaaattagttat 554546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 492 - 547
Target Start/End: Original strand, 20975557 - 20975612
Alignment:
Q  492 cattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaatt 547  Q
    ||||||||||| |||||||||| |||||||||||||||||| ||||||| ||||||    
T  20975557 cattttgttatatggcaaatgagggaatttggagttgaagattcttggattcaatt 20975612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 20712756 - 20712691
Alignment:
Q  340 ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctc 405  Q
    |||||||||||||||| ||||| || ||||||||||  |||||||| |||||| ||||||||||||    
T  20712756 ttgaacaatttgtgatcatctccctcgatttggggatggagacatacacacaaatgttgctccctc 20712691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 547
Target Start/End: Original strand, 25698507 - 25698561
Alignment:
Q  493 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaatt 547  Q
    |||||||||| ||||||||||  ||||||||||||||||| ||||||||| ||||    
T  25698507 attttgttatatggcaaatgagagaatttggagttgaagactcttggactaaatt 25698561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 340 - 405
Target Start/End: Original strand, 14514730 - 14514795
Alignment:
Q  340 ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctc 405  Q
    |||||||||||||  |  |||| ||||||||| ||||||||||||||||||| || ||||||||||    
T  14514730 ttgaacaatttgtttttgtctcgcttgatttgaggacagagacatatacacagttcttgctccctc 14514795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 338 - 395
Target Start/End: Original strand, 20967545 - 20967602
Alignment:
Q  338 tgttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattg 395  Q
    |||||| ||||||||||| || || |||||||||||||||||||| || |||||||||    
T  20967545 tgttgagcaatttgtgatcatttcccttgatttggggacagagacctacacacaattg 20967602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 491 - 563
Target Start/End: Original strand, 25377072 - 25377144
Alignment:
Q  491 ccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    |||||||||||| |||   |||||||| ||||||||| |||| ||||||| ||||||  ||||||||||||||    
T  25377072 ccattttgttatatggatgatgaaggattttggagttcaagagtcttggattcaattatttaaaattagttat 25377144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 20699663 - 20699621
Alignment:
Q  340 ttgaacaatttgtgatgatctcacttgatttggggacagagac 382  Q
    |||| ||||||||||| ||||||||||||||||| ||||||||    
T  20699663 ttgatcaatttgtgattatctcacttgatttgggaacagagac 20699621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 493 - 564
Target Start/End: Original strand, 4570927 - 4570998
Alignment:
Q  493 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttata 564  Q
    |||||||||| |||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||    
T  4570927 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttata 4570998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 492 - 564
Target Start/End: Complemental strand, 50645556 - 50645484
Alignment:
Q  492 cattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttata 564  Q
    ||||||||||| |||||||||||||| ||||||||| |||| ||||||| ||||||  |||||||||||||||    
T  50645556 cattttgttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattatttaaaattagttata 50645484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 487 - 562
Target Start/End: Complemental strand, 21855459 - 21855384
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtta 562  Q
    ||||| |||||||||| ||| | |||||||||||||| |||||||| |||||||||||| |||||||| |||||||    
T  21855459 aaaccgattttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaaagttagtta 21855384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 496 - 562
Target Start/End: Complemental strand, 4015032 - 4014966
Alignment:
Q  496 ttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtta 562  Q
    ||||||| ||||| |||||| ||||||| |||||||| ||||||||||||||||||||| |||||||    
T  4015032 ttgttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaagttagtta 4014966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 493 - 563
Target Start/End: Complemental strand, 39379131 - 39379061
Alignment:
Q  493 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    ||||| |||| ||||| |||||||||||||| |||||||| |||||||||||||| |||||||| ||||||    
T  39379131 attttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaatcagttat 39379061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 493 - 562
Target Start/End: Original strand, 10218985 - 10219054
Alignment:
Q  493 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtta 562  Q
    |||||||| | |||||||||||| |||||||  ||||||| |||||||||||||| ||||||||||||||    
T  10218985 attttgttgtatggcaaatgaagaaatttgggattgaagattcttggactcaattacttaaaattagtta 10219054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 498 - 563
Target Start/End: Original strand, 15961233 - 15961298
Alignment:
Q  498 gttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    ||||| ||| |||||||| ||||||||| |||||||||||||||||||||| ||||| ||| ||||    
T  15961233 gttatatggaaaatgaagaaatttggagctgaagaatcttggactcaattctttaaagttaattat 15961298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 493 - 564
Target Start/End: Complemental strand, 17560843 - 17560772
Alignment:
Q  493 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttata 564  Q
    |||| ||||| ||||| |||||| ||||||| |||||||| |||||||| | |||||||| |||||||||||    
T  17560843 atttggttatatggcacatgaagaaatttggggttgaagattcttggacaccattccttataattagttata 17560772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 562
Target Start/End: Complemental strand, 4016835 - 4016773
Alignment:
Q  500 tatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtta 562  Q
    ||||||||| |||||| |||||||||||||||| || |||||||| ||  ||||| |||||||    
T  4016835 tatctggcagatgaagaaatttggagttgaagattcctggactcagttgtttaaatttagtta 4016773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 499 - 563
Target Start/End: Original strand, 3625740 - 3625804
Alignment:
Q  499 ttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    |||| |||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||||    
T  3625740 ttatatggcaaatgaagaaatttggggttgaagagtcttggactcaatttcttaaaattagttat 3625804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 491 - 563
Target Start/End: Complemental strand, 25901351 - 25901279
Alignment:
Q  491 ccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    |||||||||||| ||| |||||||||| ||| ||||| |||| ||||||| ||||||  | ||||||||||||    
T  25901351 ccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 25901279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 491 - 563
Target Start/End: Complemental strand, 25915369 - 25915297
Alignment:
Q  491 ccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    |||||||||||| ||| |||||||||| ||| ||||| |||| ||||||| ||||||  | ||||||||||||    
T  25915369 ccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 25915297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 544
Target Start/End: Original strand, 3837904 - 3837960
Alignment:
Q  488 aacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactca 544  Q
    ||||||||||||| | ||| ||||||| || ||||||||| |||| |||||||||||    
T  3837904 aacccattttgttttgtgggaaatgaaagagtttggagttcaagagtcttggactca 3837960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 504 - 573
Target Start/End: Original strand, 7474 - 7543
Alignment:
Q  504 tggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatacgaatcttc 573  Q
    |||||||||||||||||||||||||| || ||||||  |||||||||||||||||| |||  ||||||||    
T  7474 tggcaaatgaaggaatttggagttgatgagtcttgggttcaattccttaaaattagctatcggaatcttc 7543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 467 - 563
Target Start/End: Complemental strand, 4765 - 4669
Alignment:
Q  467 tttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 563  Q
    ||||||| ||||||  || ||||| |||||| |||| |||||||||||| ||||||||||| |||| ||||||||||| ||  | ||||||||||||    
T  4765 tttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagttat 4669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 475 - 573
Target Start/End: Original strand, 27618473 - 27618571
Alignment:
Q  475 atgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatacgaatcttc 573  Q
    |||||| |||| |||| ||||||||||| ||| ||||| | ||| | ||||||||||| ||||||||||| || |||||| ||||||||  ||||||||    
T  27618473 atgattttaagcaaactcattttgttatatggaaaatggaagaactcggagttgaagagtcttggactcagttgcttaaagttagttatcagaatcttc 27618571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 547
Target Start/End: Original strand, 29390288 - 29390340
Alignment:
Q  495 tttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaatt 547  Q
    |||||||| ||||| |||| |||||||||||||||||||||||| ||| ||||    
T  29390288 tttgttatatggcagatgagggaatttggagttgaagaatcttgaactaaatt 29390340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 527
Target Start/End: Complemental strand, 42846501 - 42846461
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagtt 527  Q
    |||||||||||||||| |||||||||||||| |||||||||    
T  42846501 aaacccattttgttatttggcaaatgaaggattttggagtt 42846461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 547
Target Start/End: Complemental strand, 11338644 - 11338592
Alignment:
Q  495 tttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaatt 547  Q
    |||||||| ||||||||||| || |||||| || ||||||||||| |||||||    
T  11338644 tttgttatatggcaaatgaaagagtttggatttcaagaatcttggtctcaatt 11338592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 547
Target Start/End: Complemental strand, 11339487 - 11339435
Alignment:
Q  495 tttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaatt 547  Q
    |||||||| ||||||||||  || |||||| || |||||||||||||||||||    
T  11339487 tttgttatatggcaaatgagcgagtttggatttcaagaatcttggactcaatt 11339435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 547
Target Start/End: Complemental strand, 11345169 - 11345117
Alignment:
Q  495 tttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaatt 547  Q
    |||||||| ||||||||| | || |||||| || |||||||||||||||||||    
T  11345169 tttgttatatggcaaatggaagagtttggatttcaagaatcttggactcaatt 11345117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 518 - 562
Target Start/End: Original strand, 29157073 - 29157117
Alignment:
Q  518 atttggagttgaagaatcttggactcaattccttaaaattagtta 562  Q
    |||||||||||||||  | ||||||||| ||||||||||||||||    
T  29157073 atttggagttgaagagccatggactcaactccttaaaattagtta 29157117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 16595 - 16530
Alignment:
Q  340 ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctc 405  Q
    |||||||||||||||| ||||| || ||||||||||  |||||||| |||||| ||||||||||||    
T  16595 ttgaacaatttgtgatcatctccctcgatttggggatggagacatacacacaaatgttgctccctc 16530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 556
Target Start/End: Complemental strand, 13806 - 13737
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaat 556  Q
    ||||| ||||| |||| ||||| ||||||||||| |||  ||| |||||||||||||| || ||||||||    
T  13806 aaaccgattttcttatatggcagatgaaggaattaggaaatgatgaatcttggactcagtttcttaaaat 13737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 556
Target Start/End: Complemental strand, 22641 - 22572
Alignment:
Q  487 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaat 556  Q
    ||||| ||||| |||| ||||| ||||||||||| |||  ||| |||||||||||||| || ||||||||    
T  22641 aaaccgattttcttatatggcagatgaaggaattaggaaatgatgaatcttggactcagtttcttaaaat 22572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 544
Target Start/End: Original strand, 13385 - 13441
Alignment:
Q  488 aacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactca 544  Q
    ||||||||||||| | ||| ||||||| || ||||||||| |||| |||||||||||    
T  13385 aacccattttgttttgtgggaaatgaaagagtttggagttcaagagtcttggactca 13441  T

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