View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11175_low_30 (Length: 270)
Name: NF11175_low_30
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11175_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 37208891 - 37209128
Alignment:
| Q |
14 |
agatcctgaaatgtggattagtattgatgggattgttttgattcatattaagaatttgcagtggaagtttagagggaaccaaactgttatggttaataaa |
113 |
Q |
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| T |
37208891 |
agatcctgaaatgtggattagtattgatgggattgttttgattcatattaagaatttgcagtggaagtttagagggaaccaaactgttatggttaataaa |
37208990 |
T |
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| Q |
114 |
caacctgtgcatgtgttttgggatgtgtatgattggttgtttagtgtgtctgggtctggtcctgggctttttatcttcaaacctgggcccactgaagttg |
213 |
Q |
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| T |
37208991 |
caacctgtgcatgtgttttgggatgtatatgattggttgtttagtgtgtctgggtctggtcctgggctttttatcttcaaacctgggcccactgaagttg |
37209090 |
T |
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| Q |
214 |
agagtgataaagaagagaaaggtttagaaggtgagagt |
251 |
Q |
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| T |
37209091 |
agagtgataaagaagagaaaggtttagaaggtgagagt |
37209128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 29503814 - 29504001
Alignment:
| Q |
15 |
gatcctgaaatgtggattagtattgatgggattgttttgattcatattaagaatttgcagtggaagtttagagggaaccaaactgttatggttaataaac |
114 |
Q |
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| T |
29503814 |
gatcctgaaatgtggattagcattgatggaattgttttgattcatgttaagaatttgcagtggaaatttagagggaatcaaactgttatggttaataaac |
29503913 |
T |
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| Q |
115 |
aacctgtgcatgtgttttgggatgtgtatgattggttgtttagtgtgtctgggtctggtcctgggctttttatcttcaaacctgggcc |
202 |
Q |
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| T |
29503914 |
aacctgtgcaagttttttgggatgttcatgattggttgtttagtggttctggttcaggacctggacttttcatttttaaaccagggcc |
29504001 |
T |
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