View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11175_low_36 (Length: 240)
Name: NF11175_low_36
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11175_low_36 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 15221024 - 15221250
Alignment:
| Q |
17 |
aggtcactttttaacattttacatatttcatttaccacctttnnnnnnnnnnnnnnn---tcatttcgaccactatgtgtgtgtgttagtctttggacct |
113 |
Q |
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| T |
15221024 |
aggtcactttttaacattttacatatttcatttaccaccttttgaaataaaaaataaaaatcatttcaaccactatgtgtgtgtgttagtctttggacct |
15221123 |
T |
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| Q |
114 |
ttttcttttgagtaatatgatttttactacaaggtaaattaattttcggtttttccgctacatgttttaggtttcagtaacaaagaaataccctgctgta |
213 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15221124 |
ttttcttttgagtaatatgttttttactacaaggtaaattaattttcggttttccctctacatgttttaggtttcagtaacaaagaaataccctgctgta |
15221223 |
T |
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| Q |
214 |
atagtcatagtgttcttccaagtagtt |
240 |
Q |
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| T |
15221224 |
atagtcatagtgttcttccaagtagtt |
15221250 |
T |
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