View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11175_low_37 (Length: 236)

Name: NF11175_low_37
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11175_low_37
NF11175_low_37
[»] chr4 (22 HSPs)
chr4 (1-236)||(570400-570635)
chr4 (5-100)||(570722-570820)
chr4 (112-236)||(1600468-1600595)
chr4 (21-231)||(53761597-53761817)
chr4 (112-236)||(1548349-1548474)
chr4 (131-236)||(553528-553633)
chr4 (129-230)||(1524429-1524530)
chr4 (129-236)||(12116518-12116625)
chr4 (12-158)||(21834201-21834350)
chr4 (14-222)||(370983-371197)
chr4 (180-236)||(1537761-1537817)
chr4 (190-236)||(1489365-1489411)
chr4 (190-236)||(1519146-1519192)
chr4 (190-236)||(12121461-12121507)
chr4 (168-236)||(532238-532306)
chr4 (112-160)||(1552690-1552738)
chr4 (190-236)||(1513411-1513457)
chr4 (190-236)||(8184034-8184080)
chr4 (131-236)||(644879-644984)
chr4 (195-236)||(659758-659799)
chr4 (25-160)||(641040-641178)
chr4 (59-95)||(1524353-1524389)
[»] chr8 (6 HSPs)
chr8 (134-236)||(21235607-21235709)
chr8 (57-230)||(17636262-17636445)
chr8 (190-236)||(27922557-27922603)
chr8 (183-236)||(18315270-18315323)
chr8 (188-236)||(28246297-28246345)
chr8 (30-88)||(17627897-17627955)
[»] chr3 (6 HSPs)
chr3 (14-236)||(51113606-51113831)
chr3 (20-236)||(13470563-13470782)
chr3 (15-236)||(51764266-51764490)
chr3 (14-178)||(514550-514720)
chr3 (168-229)||(51120875-51120936)
chr3 (188-236)||(1657300-1657348)
[»] chr1 (4 HSPs)
chr1 (19-236)||(19468329-19468549)
chr1 (11-83)||(9586844-9586916)
chr1 (24-83)||(9581276-9581335)
chr1 (30-94)||(30827304-30827368)
[»] chr6 (16 HSPs)
chr6 (19-230)||(6426566-6426780)
chr6 (43-236)||(6394913-6395109)
chr6 (169-236)||(12102315-12102382)
chr6 (19-236)||(6589153-6589373)
chr6 (22-235)||(7119207-7119423)
chr6 (22-235)||(7131685-7131901)
chr6 (112-236)||(6432210-6432337)
chr6 (14-236)||(6410055-6410280)
chr6 (22-236)||(19632488-19632702)
chr6 (131-236)||(11936220-11936325)
chr6 (131-236)||(11948200-11948305)
chr6 (112-235)||(6402910-6403036)
chr6 (21-236)||(6423266-6423484)
chr6 (30-130)||(6594447-6594547)
chr6 (185-236)||(9411404-9411455)
chr6 (21-85)||(9411558-9411622)
[»] chr7 (3 HSPs)
chr7 (21-235)||(10614643-10614860)
chr7 (14-178)||(10169955-10170122)
chr7 (14-178)||(10177480-10177647)
[»] chr5 (3 HSPs)
chr5 (193-236)||(41901542-41901585)
chr5 (30-85)||(41889392-41889447)
chr5 (19-73)||(20477912-20477966)
[»] chr2 (1 HSPs)
chr2 (129-230)||(45245028-45245129)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-131; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-131
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 570635 - 570400
Alignment:
Q  1 tattcttgactcgcaatacatggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  570635 tattcttgactcgcaatacatggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatca 570536  T
Q  101 gatatccgatagtatttgtcaagttttaagatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  570535 gatatccgatagtatttgtcaagttttaagatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaa 570436  T
Q  201 gttctcaaactcgaggtgttgaacttgtcatataca 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  570435 gttctcaaactcgaggtgttgaacttgtcatataca 570400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 570820 - 570722
Alignment:
Q  5 cttgactcgcaatacatggttaagtgatgaaaacatttt---aatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatca 100  Q
    |||| ||| |||||||||||||||||||||||||||| |   |||||||||||| |||||||||||||||||  |||||||||||||||||||||||||    
T  570820 cttggctcacaatacatggttaagtgatgaaaacattattataatgtttgcttccattttccccaatttgcaactacttgatttaagttattgcaatca 570722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 1600595 - 1600468
Alignment:
Q  112 gtatttgtcaagttttaag---atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaa 208  Q
    |||||||||||||||||||   || || |||| |||| |||||||||||||| || || |||| | |||| ||||| ||| |||||||||||||||| ||    
T  1600595 gtatttgtcaagttttaaggagattttctaaaattagacatttgaacttagcccagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaa 1600496  T
Q  209 actcgaggtgttgaacttgtcatataca 236  Q
    ||| ||||||||||||||||||||||||    
T  1600495 actggaggtgttgaacttgtcatataca 1600468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 53761597 - 53761817
Alignment:
Q  21 tggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagat-------acttgatttaagttattgcaatcagatatccgatagt 113  Q
    ||||||||||||||||||||  ||| |||||| || |||||||||||||||||  |       |||||||||||||| |||| |||  |||||  |  ||    
T  53761597 tggttaagtgatgaaaacatcataacgtttgcatcaattttccccaatttgcaagttgcaactacttgatttaagttcttgcgatcgaatatctaaaggt 53761696  T
Q  114 atttgtcaagttttaag---atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaac 210  Q
    |||||||||||||||||   |||||||||  |||||||||||||||||||  | || |||| |||||| ||   |||| ||||||||| ||||| ||| |    
T  53761697 atttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttcccaagc 53761796  T
Q  211 tcgaggtgttgaacttgtcat 231  Q
    | |||| ||||||||||||||    
T  53761797 tagaggcgttgaacttgtcat 53761817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 1548349 - 1548474
Alignment:
Q  112 gtatttgtcaagttttaagatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgt-ggattgaactttgaagttctcaaac 210  Q
    |||||||| |||||||||||||||||||  |||| || |||||||||||||   | | ||||||||| || | | ||| ||||||||||| ||| |||||    
T  1548349 gtatttgtgaagttttaagatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaac 1548448  T
Q  211 tcgaggtgttgaacttgtcatataca 236  Q
    | |||||||||||||||||| |||||    
T  1548449 tggaggtgttgaacttgtcacataca 1548474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 553633 - 553528
Alignment:
Q  131 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtca 230  Q
    |||||||||  |||| |||||||||||| | | ||| |||| ||||||  | |||  |||||||||| ||||||||||||| ||||||||||||||||||    
T  553633 atgttgtaacattagacatttgaacttaacccgctgttcaagagtgaagttacgtacattgaactttaaagttctcaaactggaggtgttgaacttgtca 553534  T
Q  231 tataca 236  Q
    | ||||    
T  553533 tttaca 553528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 1524429 - 1524530
Alignment:
Q  129 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgt 228  Q
    ||||||||||||||||||||||||||||||||  |||| || ||| |  |||| | |||| ||||||||||||||| |||  | ||||||||||| ||||    
T  1524429 agatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaacttcatggaatgaactttgaagttcccaatttggaggtgttgaatttgt 1524528  T
Q  229 ca 230  Q
    ||    
T  1524529 ca 1524530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 12116518 - 12116625
Alignment:
Q  129 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgt 228  Q
    |||||||||||||| |||||||  ||||||||  |||| |||||| | ||||||||| || |||||||||| ||||  ||  | ||||||||||||||||    
T  12116518 agatgttgtaaactaaggcattaaaacttagcctactgttcaaaaataaaactgcgtagaatgaactttgatgttccaaatttagaggtgttgaacttgt 12116617  T
Q  229 catataca 236  Q
    || |||||    
T  12116618 cacataca 12116625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 21834201 - 21834350
Alignment:
Q  12 cgcaatacatggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgata 111  Q
    |||||| ||||||||| ||||||||  ||  ||||||||||||| |||||||||||||| ||| | |||||||| | || || ||  |||||||| ||      
T  21834201 cgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttacagctgcttgatttgacttcttccacacagatatcagaag 21834300  T
Q  112 gtatttgtcaagttttaag---atgttgtaaacttaggcatttgaactta 158  Q
    |||||||  ||||||||||   |||||||||  ||| |||||||||||||    
T  21834301 gtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaactta 21834350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 371197 - 370983
Alignment:
Q  14 caatacatggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgata-- 111  Q
    |||| |||||||||| |||||| || || ||||||||||||| |||||||  ||||||||| || ||| ||| || |||||  || | ||||| || |      
T  371197 caattcatggttaagagatgaataccttataatgtttgcttcaattttcctgaatttgcagctaattggtttgagctattgtgataacatatctgacaac 371098  T
Q  112 -gtatttgtcaagttttaa---gatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctca 207  Q
     |||| |||| ||||||||   |||| | |||  ||||||||||||||||||| |||||||||| ||||||  ||  |||  ||||| ||  ||||||||    
T  371097 agtatctgtcgagttttaaatagatggtctaagattaggcatttgaacttagcccactgctcaagagtgaagttgtatggtatgaacattagagttctca 370998  T
Q  208 aactcgaggtgttga 222  Q
    |||| ||||||||||    
T  370997 aacttgaggtgttga 370983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 1537761 - 1537817
Alignment:
Q  180 ctgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 236  Q
    |||| |||| ||||||||||||||| |||||| || |||||||||||||||||||||    
T  1537761 ctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 1537817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 1489365 - 1489411
Alignment:
Q  190 tgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 236  Q
    ||||||||||||||| |||||| || |||||||||||||||||||||    
T  1489365 tgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 1489411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 1519146 - 1519192
Alignment:
Q  190 tgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 236  Q
    ||||||||||||||| |||||| |||||||||||||||||| |||||    
T  1519146 tgaactttgaagttcccaaactagaggtgttgaacttgtcacataca 1519192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 12121461 - 12121507
Alignment:
Q  190 tgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 236  Q
    ||||||||||||||| |||||| || |||||||||||||||||||||    
T  12121461 tgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 12121507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 532306 - 532238
Alignment:
Q  168 tcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 236  Q
    |||| |||||| || | |||| ||||||||||||| | ||| || ||||||||||||||||||||||||    
T  532306 tcaagagtgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatataca 532238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 1552690 - 1552738
Alignment:
Q  112 gtatttgtcaagttttaagatgttgtaaacttaggcatttgaacttagc 160  Q
    |||||||| |||||||||||||||||||  |||| ||||||||||||||    
T  1552690 gtatttgtgaagttttaagatgttgtaagattagacatttgaacttagc 1552738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 1513411 - 1513457
Alignment:
Q  190 tgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 236  Q
    ||||||||||||||| |||||| || |||||||||||||||| ||||    
T  1513411 tgaactttgaagttcccaaactagaagtgttgaacttgtcatttaca 1513457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 8184034 - 8184080
Alignment:
Q  190 tgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 236  Q
    |||||||||||||||  ||||| |||||||||||||||||| |||||    
T  8184034 tgaactttgaagttccgaaactagaggtgttgaacttgtcacataca 8184080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 644984 - 644879
Alignment:
Q  131 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtca 230  Q
    |||||||||  |||| |||||||| ||| ||| ||| |||| | |||| || | |  ||||||||||||||||| |||||| ||||||||  ||||||||    
T  644984 atgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacttacattgaactttgaagttcccaaactggaggtgttagacttgtca 644885  T
Q  231 tataca 236  Q
    | ||||    
T  644884 tttaca 644879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 659799 - 659758
Alignment:
Q  195 tttgaagttctcaaactcgaggtgttgaacttgtcatataca 236  Q
    |||||||||| |||||| |||||||||||||||||| |||||    
T  659799 tttgaagttcccaaactagaggtgttgaacttgtcacataca 659758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 160
Target Start/End: Complemental strand, 641178 - 641040
Alignment:
Q  25 taagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagtatttgtcaagt 124  Q
    |||| |||||||||||  ||||||||||||| || ||||| ||||| | | | |||||||| ||| ||||  ||||  |||| ||  | |||| ||||||    
T  641178 taagagatgaaaacataataatgtttgcttccatgttcccaaatttacggttgcttgatttgagtgattgtgatcacgtatctgaaggaatttttcaagt 641079  T
Q  125 tttaag---atgttgtaaacttaggcatttgaacttagc 160  Q
    ||||||   |||||||||  |||| ||||||||||||||    
T  641078 tttaaggatatgttgtaatgttagacatttgaacttagc 641040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 1524353 - 1524389
Alignment:
Q  59 tttccccaatttgcagatacttgatttaagttattgc 95  Q
    |||||||||||||||| | ||||||||||||||||||    
T  1524353 tttccccaatttgcagctgcttgatttaagttattgc 1524389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 134 - 236
Target Start/End: Complemental strand, 21235709 - 21235607
Alignment:
Q  134 ttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatat 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||| |||||||||||||||||||||    
T  21235709 ttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgtgtggagtgaactttgaagttcccaaactggaggtgttgaacttgtcatat 21235610  T
Q  234 aca 236  Q
    |||    
T  21235609 aca 21235607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 230
Target Start/End: Original strand, 17636262 - 17636445
Alignment:
Q  57 attttccccaatttgcagatacttgatttaagttattgcaatcagatatccgata---gtatttgtcaagttttaa---gatgttgtaaacttaggcatt 150  Q
    |||||||||||||||||| | ||||||||| |  |||||||| | ||||| || |   ||||||||||||||||||   |||||| |||  |||||||||    
T  17636262 attttccccaatttgcagctgcttgatttacgagattgcaataaaatatcagagaaaggtatttgtcaagttttaaggggatgttctaatattaggcatt 17636361  T
Q  151 tgaacttagctcactgctcaaaagtgaaactgcgtggat----tgaactttgaagttctcaaactcgaggtgttgaacttgtca 230  Q
    |||||||||  |  || |||| ||||||||| | | |||    ||||||||||||||| |||| | ||||||||||||||||||    
T  17636362 tgaacttaggccgatgttcaagagtgaaactacatcgatcgaatgaactttgaagttcccaaattggaggtgttgaacttgtca 17636445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 27922603 - 27922557
Alignment:
Q  190 tgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 236  Q
    ||||||||||||||| |||| | ||||||||||||||||||||||||    
T  27922603 tgaactttgaagttcccaaattggaggtgttgaacttgtcatataca 27922557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 18315270 - 18315323
Alignment:
Q  183 cgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 236  Q
    |||||| |||||||| |||||| |||||| |||||||||||||||||| |||||    
T  18315270 cgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacataca 18315323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 28246297 - 28246345
Alignment:
Q  188 attgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 236  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||| ||||    
T  28246297 attgaactttgaagttcccaaactggaggtgttggacttgtcatttaca 28246345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 17627897 - 17627955
Alignment:
Q  30 gatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaag 88  Q
    |||||||||||   |||||||||||| |||||||||||||||||  | |||||||||||    
T  17627897 gatgaaaacatcaaaatgtttgcttccattttccccaatttgcaactgcttgatttaag 17627955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 51113606 - 51113831
Alignment:
Q  14 caatacatggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagt 113  Q
    |||| |||||||||| ||||| | |||  ||||| ||||||| |||||||||||| ||||| | |||||||||| | ||||| || ||||||||||  ||    
T  51113606 caatccatggttaagagatgagagcatcataatgattgcttccattttccccaatctgcagcttcttgatttaactcattgctatgagatatccgaaggt 51113705  T
Q  114 atttgtcaagtttta---agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaac 210  Q
    |||||||||||||||   |||||||||||| ||||||||||||| |||||| |||| |||||| |||| || | |||| |||||||||||| || |||||    
T  51113706 atttgtcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttgaagctcccaaac 51113805  T
Q  211 tcgaggtgttgaacttgtcatataca 236  Q
    | ||||||||  |||||||| |||||    
T  51113806 tggaggtgttagacttgtcaaataca 51113831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 13470563 - 13470782
Alignment:
Q  20 atggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagtatttgt 119  Q
    ||||||||||||||||  |||  ||||||||||||| | |||||||||||||||| | |||||||| | || ||||||||   ||||  |  ||||||||    
T  13470563 atggttaagtgatgaaggcatcataatgtttgcttccaatttccccaatttgcagctgcttgatttgaattgttgcaatctcttatcaaaaggtatttgt 13470662  T
Q  120 caagttttaag---atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgagg 216  Q
    |||||||||||   |||||||||  |||||||||||||||||||  | ||   ||||||||| || | |||| |||||||||  |||| ||| || ||||    
T  13470663 caagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaatctggagg 13470762  T
Q  217 tgttgaacttgtcatataca 236  Q
    |||||||||||||| |||||    
T  13470763 tgttgaacttgtcaaataca 13470782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 51764266 - 51764490
Alignment:
Q  15 aatacatggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagta 114  Q
    |||||||||||||||||||||| |||  ||||||||||||| |||||||||||||||||| | |||||||| | || ||||||||  |||||  |  ||     
T  51764266 aatacatggttaagtgatgaaagcatcataatgtttgcttccattttccccaatttgcagctgcttgattttaattcttgcaatcgcatatctaaaggtg 51764365  T
Q  115 tttgtcaagtttta---agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaact 211  Q
    | ||| ||||||||   ||||||| |||  |||||||||||||| || |  | || |||| |||||| || | |||| ||||||||| |||||  || ||    
T  51764366 tctgtgaagttttaaggagatgttctaagattaggcatttgaacctatccgaatgttcaagagtgaagctacttggaatgaactttgcagttccgaagct 51764465  T
Q  212 cgaggtgttgaacttgtcatataca 236  Q
     ||||||||  ||||||||| ||||    
T  51764466 ggaggtgttagacttgtcatttaca 51764490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 514550 - 514720
Alignment:
Q  14 caatacatggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatc---cgat 110  Q
    |||| |||| ||||| ||||||||| || ||||||||||||| |||||||| ||||||||| || ||||||| || |||||  || | |||||   | |     
T  514550 caattcatgcttaagagatgaaaaccttataatgtttgcttcaattttcccgaatttgcagctaattgatttgagctattgtgataacatatctgacaaa 514649  T
Q  111 agtatttgtcaagtttta---agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaa 178  Q
    ||||| ||||||||||||   ||||| | |||  ||||||||||||||||||| |||||||||| ||||||    
T  514650 agtatctgtcaagttttaaagagatggtctaagattaggcatttgaacttagcccactgctcaagagtgaa 514720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 51120875 - 51120936
Alignment:
Q  168 tcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtc 229  Q
    |||| ||||||||||| |||| |||||||||||||||||||| | |||||||||||||||||    
T  51120875 tcaagagtgaaactgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtc 51120936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 1657348 - 1657300
Alignment:
Q  188 attgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 236  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||| ||||    
T  1657348 attgaactttgaagttcccaaactggaggtgttggacttgtcatttaca 1657300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 19468329 - 19468549
Alignment:
Q  19 catggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagtatttg 118  Q
    |||||||||| |||||||||||  ||||||||||||| ||||| |||||||||||| | |||||||| |  |  ||||| || ||||| ||  | |||||    
T  19468329 catggttaagcgatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttgaactcatgcaaccacatatcggaaggcatttg 19468428  T
Q  119 tcaagttttaaga---tgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgag 215  Q
    ||||||||||||    |||| |||  |||||||||| |||||||| ||||| |||| |||||| || | |||| ||||||||| ||||| ||| || |||    
T  19468429 tcaagttttaaggaggtgttctaatattaggcatttaaacttagcccactgttcaagagtgaatctacttggagtgaactttgtagttcccaagctggag 19468528  T
Q  216 gtgttgaacttgtcatataca 236  Q
    |||||||| |||||| |||||    
T  19468529 gtgttgaagttgtcagataca 19468549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 9586916 - 9586844
Alignment:
Q  11 tcgcaatacatggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgat 83  Q
    |||||||  ||||||||| ||| |||||||  ||||||||||||| |||||||||||||||||| | ||||||    
T  9586916 tcgcaatcaatggttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgat 9586844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 9581335 - 9581276
Alignment:
Q  24 ttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgat 83  Q
    ||||| ||| |||||||  ||||||||||||| |||||||||||||||||| | ||||||    
T  9581335 ttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgat 9581276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 30827368 - 30827304
Alignment:
Q  30 gatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattg 94  Q
    |||||||||||  || ||||| |||||||||||||||||||| || | |||||||| || |||||    
T  30827368 gatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 30827304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 6426780 - 6426566
Alignment:
Q  19 catggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgattt-aagttattgcaatcagatatccgatagtattt 117  Q
    |||||||||||||||||| |||  |||||| |||||| |||||||||||||| ||| |||||||||| ||| | ||||  | | ||||| ||  ||||||    
T  6426780 catggttaagtgatgaaatcatcataatgtatgcttccattttccccaatttacagctacttgatttgaaggt-ttgccgtgaaatatctgaaggtattt 6426682  T
Q  118 gtcaagttttaag---atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcga 214  Q
    || ||||||||||   ||||||||| ||||  |||||||||||||||  ||| ||||| |||||||| | |||| ||||||||| ||||| | | || ||    
T  6426681 gtgaagttttaaggaaatgttgtaagcttaaacatttgaacttagctttctgttcaaacgtgaaactacatggaatgaactttgcagttcccgagctgga 6426582  T
Q  215 ggtgttgaacttgtca 230  Q
    ||||||||| ||||||    
T  6426581 ggtgttgaatttgtca 6426566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 236
Target Start/End: Complemental strand, 6395109 - 6394913
Alignment:
Q  43 taatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagtatttgtcaagttttaag---atgttgtaa 139  Q
    |||||||| |||| |||||||||||||| ||| |||||||||| |    ||||   || ||||| ||  ||||||||||||||||||    |||||||||    
T  6395109 taatgtttacttccattttccccaatttacagctacttgatttgacacgttgctcacaaatatctgaaggtatttgtcaagttttaaagaaatgttgtaa 6395010  T
Q  140 acttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 236  Q
     ||||  |||||||||||||||  ||| |||||||||||||| | |||| ||||||||| ||||| | | || |||||||||||||||||| |||||    
T  6395009 gcttaaacatttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaacttgtcaaataca 6394913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 12102382 - 12102315
Alignment:
Q  169 caaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 236  Q
    ||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||| |||||    
T  12102382 caaaagtgaaactgcatggattgaactttgaagttcccaaactggaggtgttgaacttgtcacataca 12102315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 6589153 - 6589373
Alignment:
Q  19 catggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagtatttg 118  Q
    ||||||||||||||| ||| ||  ||||||||||||| ||||||||||||||  || | |||||||| | || ||| ||| | |||||  |  |||||||    
T  6589153 catggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatttcaattcttgtaataacatatctaaaggtatttg 6589252  T
Q  119 tcaagtttt---aagatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgag 215  Q
    |||||| ||   ||||||||||||  |||||||||||||||||||   |||    |||||||| || | |||| ||||||||| ||||| ||  || |||    
T  6589253 tcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagctacttggaatgaactttgtagttcccatgctggag 6589352  T
Q  216 gtgttgaacttgtcatataca 236  Q
    ||||||||||||||| |||||    
T  6589353 gtgttgaacttgtcaaataca 6589373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 7119423 - 7119207
Alignment:
Q  22 ggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagtatttgtca 121  Q
    |||||| ||||||||| ||| |||| || |||||  ||||||||||||| ||  | |||||||| | |  ||||||| | ||||| ||  ||||||||||    
T  7119423 ggttaactgatgaaaaaattgtaatattagcttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaaggtatttgtca 7119324  T
Q  122 agttttaag---atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtg 218  Q
    |||||||||   ||||| |||  |||  |||||||||||||| ||||| |||| |||||| || | |||| |||||||||  |||| | | || ||||||    
T  7119323 agttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcaccagctggaggtg 7119224  T
Q  219 ttgaacttgtcatatac 235  Q
    |||||||||||| ||||    
T  7119223 ttgaacttgtcagatac 7119207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 7131901 - 7131685
Alignment:
Q  22 ggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagtatttgtca 121  Q
    |||||| ||||||||| ||| |||| || |||||  ||||||||||||| ||  | |||||||| | |  ||||||| | ||||| ||  ||||||||||    
T  7131901 ggttaactgatgaaaaaattgtaatattagcttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaaggtatttgtca 7131802  T
Q  122 agttttaag---atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtg 218  Q
    |||||||||   ||||| |||  |||  |||||||||||||| ||||| |||| |||||| || | |||| |||||||||  |||| | | || ||||||    
T  7131801 agttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcgccagctggaggtg 7131702  T
Q  219 ttgaacttgtcatatac 235  Q
    |||||||||||| ||||    
T  7131701 ttgaacttgtcagatac 7131685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 6432337 - 6432210
Alignment:
Q  112 gtatttgtcaagttttaag---atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaa 208  Q
    |||||||||||||||||||   ||||||||||||||  ||||||||||||||  | ||   ||||||||| || | |||| ||||||||||||||| |||    
T  6432337 gtatttgtcaagttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttcccaa 6432238  T
Q  209 actcgaggtgttgaacttgtcatataca 236  Q
     ||  ||||||||||||||||| |||||    
T  6432237 gctgaaggtgttgaacttgtcaaataca 6432210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 6410280 - 6410055
Alignment:
Q  14 caatacatggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagt 113  Q
    |||||||| ||||||||||||||  ||  |  |||||||||| ||||| |||||||| ||  |||||||||| |    |||| | || ||||| ||  ||    
T  6410280 caatacatcgttaagtgatgaaataatcattttgtttgcttccatttttcccaatttacaactacttgatttgacgggttgccagcaaatatctgaaggt 6410181  T
Q  114 atttgtcaagtttta---agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaac 210  Q
    |||||||||||||||   | ||||||||| |||| ||||||| |||||||  | |||  ||||||||| || | |||| ||||||||||||||| ||| |    
T  6410180 atttgtcaagttttacagaaatgttgtaagcttaagcatttggacttagcctattgcaaaaaagtgaagctacatggaatgaactttgaagttcccaagc 6410081  T
Q  211 tcgaggtgttgaacttgtcatataca 236  Q
    |  |||||||||||| |||| |||||    
T  6410080 tgaaggtgttgaactagtcaaataca 6410055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 19632702 - 19632488
Alignment:
Q  22 ggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagtatttgtca 121  Q
    |||||||||||||||| |||  |||||| |||||  |||| ||||||||| ||   |||||||| | |  |||| || | |||||  ||  |||||||||    
T  19632702 ggttaagtgatgaaaagattacaatgttcgcttcgttttttcccaatttgtagcggcttgatttgaatcgttgctattacatatctaatgctatttgtca 19632603  T
Q  122 agttttaagatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttg 221  Q
    ||||||||||||||||||  | | ||||||||||||| |||  || |||| ||| || || | |||| | ||||||  ||||| ||| || |||||||||    
T  19632602 agttttaagatgttgtaagataacgcatttgaacttaactcgatgttcaatagttaacctacttggaataaactttctagttcccaagctagaggtgttg 19632503  T
Q  222 aacttgtcatataca 236  Q
     ||||||| ||||||    
T  19632502 gacttgtcgtataca 19632488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 11936220 - 11936325
Alignment:
Q  131 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtca 230  Q
    |||||||||  |||| |||||||| ||| ||| ||| |||| | |||| || |||  ||||||||||||||||| |||||| ||||||||| ||||||||    
T  11936220 atgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtca 11936319  T
Q  231 tataca 236  Q
    | ||||    
T  11936320 tttaca 11936325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 11948200 - 11948305
Alignment:
Q  131 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtca 230  Q
    |||||||||  |||| |||||||| ||| ||| ||| |||| | |||| || |||  ||||||||||||||||| |||||| ||||||||| ||||||||    
T  11948200 atgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtca 11948299  T
Q  231 tataca 236  Q
    | ||||    
T  11948300 tttaca 11948305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 235
Target Start/End: Complemental strand, 6403036 - 6402910
Alignment:
Q  112 gtatttgtcaagttttaag---atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaa 208  Q
    |||||||||||||||||||   |||||||||  ||||||||||||||||| ||   || |||| |||||| || | |||| | ||||||| ||||| | |    
T  6403036 gtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttcccca 6402937  T
Q  209 actcgaggtgttgaacttgtcatatac 235  Q
    ||| || ||||||||||||||| ||||    
T  6402936 actagaagtgttgaacttgtcagatac 6402910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 6423484 - 6423266
Alignment:
Q  21 tggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagtatttgtc 120  Q
    |||||||||||||||| |||  ||||||||||||| |||||||| |||||  |  |||||||||| |    |||| |||| ||||  ||| |||||||||    
T  6423484 tggttaagtgatgaaatcatcataatgtttgcttccattttccctaatttaaaactacttgatttgaagggttgccatcaaatatttgatggtatttgtc 6423385  T
Q  121 aagtttta---agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggt 217  Q
    | ||||||   | |||| || | ||||  ||||||||||||||  | ||   | ||||||| || |||| | |||||||| |||||| ||| || |||||    
T  6423384 atgttttacggaaatgtcgtgagcttaaacatttgaacttagcctattgtgaacaagtgaagctacgtgcaatgaacttttaagttcccaagctggaggt 6423285  T
Q  218 gttgaacttgtcatataca 236  Q
    ||||||||||||| |||||    
T  6423284 gttgaacttgtcaaataca 6423266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 6594447 - 6594547
Alignment:
Q  30 gatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagtatttgtcaagttttaa 129  Q
    |||||||||||  || ||||||||||||||||||||| |||| || | |||||||| || | || | |||| ||||| ||  ||||||||||||||||||    
T  6594447 gatgaaaacatcatattgtttgcttctattttccccactttggagctgcttgatttgaggttttccgatcaaatatctgaaggtatttgtcaagttttaa 6594546  T
Q  130 g 130  Q
    |    
T  6594547 g 6594547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 9411455 - 9411404
Alignment:
Q  185 tggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 236  Q
    ||||||||||||||| |||| ||| || ||||||||||||||||||||||||    
T  9411455 tggattgaactttgaggttcccaagctggaggtgttgaacttgtcatataca 9411404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 9411622 - 9411558
Alignment:
Q  21 tggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgattt 85  Q
    |||||||| ||| |||||||   || ||||||||| |||||||||||||||||| | ||||||||    
T  9411622 tggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgattt 9411558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 10614860 - 10614643
Alignment:
Q  21 tggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagtatttgtc 120  Q
    |||||||| ||||||  |||| ||| ||||||||| | |||||||||||||||  | |||||||| | |  ||||||||   |||  ||  |||||||||    
T  10614860 tggttaagcgatgaaggcattataaagtttgcttccaatttccccaatttgcaactgcttgatttgaatcgttgcaatctcttatatgaaggtatttgtc 10614761  T
Q  121 aagttttaag---atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggt 217  Q
    ||||||||||   |||||||||  |||||||||||||||||||  | ||   ||||||||| || | |||| ||||| |||  |||| ||| || |||||    
T  10614760 aagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaatctggaggt 10614661  T
Q  218 gttgaacttgtcatatac 235  Q
    ||||||||||||| ||||    
T  10614660 gttgaacttgtcaaatac 10614643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 10169955 - 10170122
Alignment:
Q  14 caatacatggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagt 113  Q
    |||||||||| |||| |||||| ||||  |||||||| |||| ||||| || |||||| || |  ||||||| |  | ||||||||| ||||| ||  |     
T  10169955 caatacatgggtaagggatgaacacatcataatgttttcttccatttttcctaatttgaagctgtttgatttgaactcttgcaatcacatatcggaaggc 10170054  T
Q  114 atttgtcaagtttta---agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaa 178  Q
    |||||||||||||||   || |||| |||  |||||||||| || ||||| ||||| |||| ||||||    
T  10170055 atttgtcaagttttaaggaggtgttctaatattaggcatttaaatttagcccactgttcaagagtgaa 10170122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 10177480 - 10177647
Alignment:
Q  14 caatacatggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagt 113  Q
    |||||||||| |||| |||||| ||||  |||||||| |||| ||||| || |||||| || |  ||||||| |  | ||||||||| ||||| ||  |     
T  10177480 caatacatgggtaagggatgaacacatcataatgttttcttccatttttcctaatttgaagctgtttgatttgaactcttgcaatcacatatcggaaggc 10177579  T
Q  114 atttgtcaagtttta---agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaa 178  Q
    |||||||||||||||   || |||| |||  |||||||||| || ||||| ||||| |||| ||||||    
T  10177580 atttgtcaagttttaaggaggtgttctaatattaggcatttaaatttagcccactgttcaagagtgaa 10177647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 41901542 - 41901585
Alignment:
Q  193 actttgaagttctcaaactcgaggtgttgaacttgtcatataca 236  Q
    |||||||||||| |||||| ||||||||||||||||||||||||    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatataca 41901585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 41889392 - 41889447
Alignment:
Q  30 gatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgattt 85  Q
    |||||| ||||  ||||||||||||| |||||||| ||||||||| ||||||||||    
T  41889392 gatgaagacatcataatgtttgcttccattttccctaatttgcagctacttgattt 41889447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 20477912 - 20477966
Alignment:
Q  19 catggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgca 73  Q
    ||||||||||||||||||  ||  |||| ||||||||||| ||||||||||||||    
T  20477912 catggttaagtgatgaaataataataatatttgcttctatgttccccaatttgca 20477966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 45245028 - 45245129
Alignment:
Q  129 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgt 228  Q
    |||||||||||  |||||||||| ||||||| |  ||| |||| | || || | |||||| | |||||||||||||  ||||| ||||||||||| ||||    
T  45245028 agatgttgtaacattaggcatttaaacttagtttgctgttcaagactggaattacgtggaataaactttgaagttccaaaacttgaggtgttgaatttgt 45245127  T
Q  229 ca 230  Q
    ||    
T  45245128 ca 45245129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University