View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11175_low_40 (Length: 218)
Name: NF11175_low_40
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11175_low_40 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 17513075 - 17513262
Alignment:
| Q |
15 |
aagaagatgttgataaattatgaataaaaagctatgcttaagata-tttcactatccatgagtatgtttgggttaacnnnnnnnnntatttagaatgaaa |
113 |
Q |
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| T |
17513075 |
aagaagatgttgataaattatgaataaaaagctatgcttaagataatttcactatccatgagtatgtttgggttaacaaaaaaaaatatttagaatgaaa |
17513174 |
T |
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| Q |
114 |
gggttaaccattgctattttattattttttaaaatgaaaataaggcattagaagtgaaataaatttcatggtaaatatggtttaaaat |
201 |
Q |
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| T |
17513175 |
gggttaaccattgctattttattattttttaaaatgaaaataaggcattagaagtgaaataaatttcatggtaaatatggtttaaaat |
17513262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 17513693 - 17513759
Alignment:
| Q |
135 |
ttattttttaaaatgaaaataaggcattagaagtgaaataaatttcatggtaaatatggtttaaaat |
201 |
Q |
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| T |
17513693 |
ttattttttaaaatgaaaataaggcattagaagtgaaataaatttcatggtaaatatggtttaaaat |
17513759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 759 - 576
Alignment:
| Q |
16 |
agaagatgttgataaattatgaataaaaagctatgcttaagat-atttcactatccatgagtatgtttgggttaacnnnnnnnnntatttagaatgaaag |
114 |
Q |
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| T |
759 |
agaagatgttgataaattatgaataaaaagctatatttaagataatttcactatccatgagtatgtttgggttaac----aattttttcttgaaggaaag |
664 |
T |
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| Q |
115 |
ggttaaccattgctattttattattttttaaaatgaaa-ataaggcattagaagtgaaataaatttcatggtaaatatggtttaaaat |
201 |
Q |
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| T |
663 |
ggttaaccaatgctattttattattatttaaaataaaatataaggcactagaagtgaactaaattccatgctaaatatggtttgaaat |
576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 34245935 - 34246108
Alignment:
| Q |
16 |
agaagatgttgataaattatgaataaaaagctatgcttaagata-tttcactatccatgagtatgtttgggttaacnnnnnnnnntatttagaatgaaag |
114 |
Q |
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| T |
34245935 |
agaagatgttgataaattatgaataaaaagctatgcttatgatagtttcactatccatgagtatgtttgggttaaccaattttttt-ttttgaaggaaag |
34246033 |
T |
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| Q |
115 |
ggttaaccattgctattttattattttttaaaat-gaaaataaggcattag-aagtgaaataaatttcatggtaa |
187 |
Q |
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| T |
34246034 |
ggttaaccaatgctattttattattatttaaaataaaaaataaggcattagaaagtgaacgaaattccatggtaa |
34246108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 1093404 - 1093317
Alignment:
| Q |
114 |
gggttaaccattgctattttattattttttaaaatgaaaataaggcattagaagtgaaataaatttcatggtaaatatggtttaaaat |
201 |
Q |
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| T |
1093404 |
gggttaaccaatgctattttattattatttaaaataaaaataaggtattaaatgtgaactaagttccatggtaaatatggtttgaaat |
1093317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 1093476 - 1093397
Alignment:
| Q |
11 |
agagaagaagatgttgataaattatgaataaaaagctatgcttaagat-atttcactatccatgagtatgtttgggttaac |
90 |
Q |
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| T |
1093476 |
agagtagaagatgttgataaat-atgaataaaaagctatgattaagataattttactttccatgagcatgtttgggttaac |
1093397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 29361911 - 29362101
Alignment:
| Q |
16 |
agaagatgttgataaattatgaataaaaagctatgcttaagata-tttcactatccatgagtatgtttgggttaacnnnnnnnnntatt--tagaatgaa |
112 |
Q |
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| T |
29361911 |
agaagatgttgataaattataagtaaaaggctatacttaagataatttcactatccatgagtatgtttgggttaaccaaaaaaaaaaaaaatagaatgaa |
29362010 |
T |
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| Q |
113 |
aggg--ttaaccattgctattttattattttttaaaatgaaaataaggcattagaagtgaaataaatttcatggtaaatatggtttaaaat |
201 |
Q |
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| T |
29362011 |
agggggttaaccaatgctattttattaatatttaaaataaagataaggtattagaagtgaactaaattccatggcaaatatggtttaaaat |
29362101 |
T |
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