View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11175_low_43 (Length: 211)
Name: NF11175_low_43
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11175_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 17092465 - 17092288
Alignment:
| Q |
15 |
atgaaacctctcatttcacggacatgccatcttatttgcaacatcgccacacaaatgacaagttccgcccaagatcctatannnnnnnattatagataat |
114 |
Q |
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| T |
17092465 |
atgaaacctctcatttcacggacatgccatcttattttcaacatcgccacaaaaatgacaagttccgcccaagatcttatatttttt-attatagataat |
17092367 |
T |
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| Q |
115 |
gcatgcaaaaattgaggtgattgataaagctagtgtatggagagtaggtgatggaagaagtatccgaatgtggaaagac |
193 |
Q |
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| T |
17092366 |
gcatgcaaaaattgaggtgattgataaagttggtgtatggagagtaggtgatggaagaagtatccgagtgtggaaagac |
17092288 |
T |
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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 35955734 - 35955817
Alignment:
| Q |
110 |
ataatgcatgcaaaaattgaggtgattgataaagctagtgtatggagagtaggtgatggaagaagtatccgaatgtggaaagac |
193 |
Q |
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| T |
35955734 |
ataatgcatttaaaaattgagttgattgataaagctggtgtatggagagtaggtgatggaagaagtatccgagtgtggaaagac |
35955817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 26887972 - 26887893
Alignment:
| Q |
110 |
ataatgcatgcaaaaattgaggtgattgataaagctagtgtatggagagtaggtgatggaagaagtatccgaatgtggaa |
189 |
Q |
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||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
26887972 |
ataatgcatgcaaaatttgaggtgattgataaagttggtgtatggagagtaggtgatggaagaaatatccgagtgtggaa |
26887893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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