View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11175_low_5 (Length: 624)

Name: NF11175_low_5
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11175_low_5
NF11175_low_5
[»] chr5 (15 HSPs)
chr5 (211-607)||(30790285-30790681)
chr5 (333-425)||(30809333-30809428)
chr5 (332-425)||(41779907-41780000)
chr5 (467-535)||(30798860-30798928)
chr5 (337-394)||(30801654-30801711)
chr5 (343-555)||(30657336-30657546)
chr5 (331-394)||(32573495-32573558)
chr5 (332-425)||(30805468-30805564)
chr5 (344-386)||(31337508-31337550)
chr5 (333-422)||(10703686-10703774)
chr5 (331-364)||(24806005-24806038)
chr5 (494-535)||(29828369-29828410)
chr5 (237-266)||(30799126-30799155)
chr5 (336-387)||(30701798-30701849)
chr5 (336-387)||(30736913-30736964)
[»] chr3 (2 HSPs)
chr3 (331-431)||(21319517-21319616)
chr3 (330-423)||(21316286-21316377)
[»] chr2 (1 HSPs)
chr2 (327-394)||(1681445-1681512)
[»] chr7 (1 HSPs)
chr7 (333-421)||(6962434-6962522)
[»] chr4 (1 HSPs)
chr4 (468-535)||(4226843-4226910)


Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 211 - 607
Target Start/End: Complemental strand, 30790681 - 30790285
Alignment:
Q  211 tcagggaatcagagatgtcttcctactccattcacattttttatcaatgcacttcatttcaaaatactcatgcaatgattttggacaatcagcatcggtt 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30790681 tcagggaatcagagatgtcttcctactccattcacattttttatcaatgcacttcatttcaaaatactcatgcaatgattttggacaatcagcatcgggt 30790582  T
Q  311 tcacatggaatatcagtatgtgctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaacaacaaatcaaaaaaga 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  30790581 tcacatggaatatcagtatgtgctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaacaacaaagcaaaaaagg 30790482  T
Q  411 aaatttgaaaaggattagaaatggcttgccaacatcatgaactttccttgcaagatgaaataaggaaagaaatagaatcatttcataaacaaacttgaga 510  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30790481 aaatttgaaaaggattagaaatggcttgccaacatcatgaacttcccttgcaagatgaaataaggaaagaaatagaatcatttcataaacaaacttgaga 30790382  T
Q  511 attttattcatagtttttcctctttacaagtgcaaaatagaatataattatctctttaaattgtataaagttcaagctcttttgaaaataatttaat 607  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30790381 attttattcatagtttttcctctttacaagtgaaaaatagaatataaatatctctttaaattgtataaagttcaagctcttttgaaaataatttaat 30790285  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 333 - 425
Target Start/End: Complemental strand, 30809428 - 30809333
Alignment:
Q  333 ctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaaga---ttgtgtatgaacaacaaatcaaaaaagaaaatttgaaaaggat 425  Q
    |||||||||| ||| ||| ||||||||||||||| ||| |||||||||||   |||| ||||||| ||||| |||| |||||||||||||| ||||    
T  30809428 ctgtaatgaataaatatagtaaaataatgttactaaaagatgataaaagaaagttgtttatgaactacaaagcaaagaagaaaatttgaaatggat 30809333  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 332 - 425
Target Start/End: Complemental strand, 41780000 - 41779907
Alignment:
Q  332 gctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaacaacaaatcaaaaaagaaaatttgaaaaggat 425  Q
    ||||||||||||| |||| |||| ||||||||||| |||||| | ||||||||||||||| || |  ||  |||||||||||| ||||||||||    
T  41780000 gctgtaatgaaaagagatgataacataatgttactaaaacattagaaaagattgtgtatgcactatgaagtaaaaaagaaaatgtgaaaaggat 41779907  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 467 - 535
Target Start/End: Complemental strand, 30798928 - 30798860
Alignment:
Q  467 gaaataaggaaagaaatagaatcatttcataaacaaacttgagaattttattcatagtttttcctcttt 535  Q
    |||||||||||||||| ||||||||| |||||||||| |||||| ||| | |||||||||||| |||||    
T  30798928 gaaataaggaaagaaaaagaatcattgcataaacaaatttgagagtttcaatcatagtttttcgtcttt 30798860  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 30801711 - 30801654
Alignment:
Q  337 aatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaac 394  Q
    |||||| ||| ||||||||||||||||||| |||||||||||||  ||||||||||||    
T  30801711 aatgaagaaatataataaaataatgttactaaaacatgataaaaagttgtgtatgaac 30801654  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 343 - 555
Target Start/End: Original strand, 30657336 - 30657546
Alignment:
Q  343 aaaagataataaaataatgtta-ctgaaacatgataaaagattgtgtatgaacaacaaatcaaaaaagaaaatttgaaaaggattagaaatggcttgcca 441  Q
    |||||| || |||||||||||| || |||||||||||||||||||||| ||||  ||||  ||| |  |||| |||||||| || ||||||| ||| |||    
T  30657336 aaaagaaaagaaaataatgttaactaaaacatgataaaagattgtgtacgaactgcaaagtaaatagaaaaaattgaaaagaatgagaaatgacttacca 30657435  T
Q  442 acatcatgaactttccttgcaagatgaaataaggaaagaaatagaatcatttcataaacaaacttgagaattttattcatagtttttcctctttacaagt 541  Q
     ||||   ||||| | ||   | | ||||||||| |||||||||||||||  |||||||||| | ||||||||    ||||  ||||||||||| || ||    
T  30657436 ccatc---aacttccgttatgacaagaaataagggaagaaatagaatcatagcataaacaaattcgagaatttccaccatatgttttcctctttgcatgt 30657532  T
Q  542 gcaaaatagaatat 555  Q
      ||||||||||||    
T  30657533 caaaaatagaatat 30657546  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 331 - 394
Target Start/End: Original strand, 32573495 - 32573558
Alignment:
Q  331 tgctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaac 394  Q
    ||||||||||||||||  ||| ||||||||  || | |||||||||||||||||||||||||||    
T  32573495 tgctgtaatgaaaaaaagtaacaaaataatactattaaaacatgataaaagattgtgtatgaac 32573558  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 425
Target Start/End: Complemental strand, 30805564 - 30805468
Alignment:
Q  332 gctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaaga---ttgtgtatgaacaacaaatcaaaaaagaaaatttgaaaaggat 425  Q
    ||||||| ||| ||| ||| ||||||| ||||||| ||| |||||||||||   |||||||||||| ||||| |||| ||| |||||||||| ||||    
T  30805564 gctgtaacgaataaatatagtaaaatagtgttactaaaagatgataaaagaaagttgtgtatgaactacaaagcaaagaaggaaatttgaaatggat 30805468  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 31337550 - 31337508
Alignment:
Q  344 aaagataataaaataatgttactgaaacatgataaaagattgt 386  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  31337550 aaagataataaaataatattactaaaacatgataaaagattgt 31337508  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 333 - 422
Target Start/End: Complemental strand, 10703774 - 10703686
Alignment:
Q  333 ctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaacaacaaatcaaaaaagaaaatttgaaaag 422  Q
    |||||||||| ||||||||||||||||| | | | ||| || |||||| ||| |||| |||||||||| |||||||| |||||| |||||    
T  10703774 ctgtaatgaacaaagataataaaataatatcaataaaatat-ataaaatattttgtacgaacaacaaagcaaaaaaggaaattttaaaag 10703686  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 364
Target Start/End: Complemental strand, 24806038 - 24806005
Alignment:
Q  331 tgctgtaatgaaaaaagataataaaataatgtta 364  Q
    ||||| ||||||||||||||||||||||||||||    
T  24806038 tgctgcaatgaaaaaagataataaaataatgtta 24806005  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 535
Target Start/End: Original strand, 29828369 - 29828410
Alignment:
Q  494 cataaacaaacttgagaattttattcatagtttttcctcttt 535  Q
    |||||| |||||||||||||||| ||||| ||||||||||||    
T  29828369 cataaataaacttgagaattttactcatattttttcctcttt 29828410  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 266
Target Start/End: Complemental strand, 30799155 - 30799126
Alignment:
Q  237 tccattcacattttttatcaatgcacttca 266  Q
    ||||||||||||||||||||||||||||||    
T  30799155 tccattcacattttttatcaatgcacttca 30799126  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 30701798 - 30701849
Alignment:
Q  336 taatgaaaaaa-gataataaaataatgttactgaaacatgataaaagattgtg 387  Q
    ||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||    
T  30701798 taatgaaaaaacgataataaaataatgttact-aaatatgttaaaagattgtg 30701849  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 30736913 - 30736964
Alignment:
Q  336 taatgaaaaaa-gataataaaataatgttactgaaacatgataaaagattgtg 387  Q
    ||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||    
T  30736913 taatgaaaaaacgataataaaataatgttact-aaatatgttaaaagattgtg 30736964  T

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Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 331 - 431
Target Start/End: Complemental strand, 21319616 - 21319517
Alignment:
Q  331 tgctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaacaacaaatcaaaaaagaaaatttgaaaaggattagaa 430  Q
    |||||||||||||||| | ||||||||||| ||||| ||||  |||||||||||||||| |||| |  ||| ||||||||||||||||||||||| ||||    
T  21319616 tgctgtaatgaaaaaacaaaataaaataatattactaaaacgagataaaagattgtgtacgaacta-taattaaaaaagaaaatttgaaaaggataagaa 21319518  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 423
Target Start/End: Complemental strand, 21316377 - 21316286
Alignment:
Q  330 gtgctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaacaacaaatcaaaaaagaaaatttgaaaagg 423  Q
    ||||||||||||||||| | |||| |||||||||||| ||||  ||| |||||||||||| |||| | |||| |||  ||||||||| ||||||    
T  21316377 gtgctgtaatgaaaaaacaaaatataataatgttactaaaacgagat-aaagattgtgtacgaacta-aaattaaagtagaaaatttaaaaagg 21316286  T

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Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 327 - 394
Target Start/End: Original strand, 1681445 - 1681512
Alignment:
Q  327 tatgtgctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaac 394  Q
    |||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||| ||||    
T  1681445 tatgtgctgtaatgaaaagagataataaaataatgttatcaaaacatgataaaagattgtgtacgaac 1681512  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 333 - 421
Target Start/End: Complemental strand, 6962522 - 6962434
Alignment:
Q  333 ctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaacaacaaatcaaaaaagaaaatttgaaaa 421  Q
    ||||||||| |||||| ||||||||||||||| | ||||| ||||||| ||||| ||  |||||||||  ||| |||||||||||||||    
T  6962522 ctgtaatgacaaaagagaataaaataatgttaataaaacaagataaaatattgtatacaaacaacaaagtaaataagaaaatttgaaaa 6962434  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 535
Target Start/End: Original strand, 4226843 - 4226910
Alignment:
Q  468 aaataaggaaagaaatagaatcatttcataaacaaacttgagaattttattcatagtttttcctcttt 535  Q
    ||||||| ||||||||||||||||  |||| ||||||||||||| || |  |||| ||||||||||||    
T  4226843 aaataagaaaagaaatagaatcataacatagacaaacttgagaagttcaaccatattttttcctcttt 4226910  T

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