View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11175_low_6 (Length: 555)

Name: NF11175_low_6
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11175_low_6
NF11175_low_6
[»] chr3 (4 HSPs)
chr3 (19-480)||(35990167-35990628)
chr3 (507-537)||(35990654-35990684)
chr3 (379-439)||(18268007-18268067)
chr3 (379-435)||(51733145-51733201)
[»] chr2 (1 HSPs)
chr2 (106-158)||(11248033-11248085)
[»] chr1 (3 HSPs)
chr1 (357-435)||(43328468-43328546)
chr1 (384-440)||(26462652-26462708)
chr1 (355-431)||(43609796-43609872)
[»] chr5 (1 HSPs)
chr5 (377-437)||(31614135-31614195)
[»] scaffold0205 (1 HSPs)
scaffold0205 (379-421)||(21431-21473)
[»] chr8 (1 HSPs)
chr8 (399-441)||(2512757-2512799)
[»] chr7 (2 HSPs)
chr7 (377-435)||(46179910-46179968)
chr7 (377-433)||(3262875-3262931)
[»] chr4 (1 HSPs)
chr4 (377-421)||(24875739-24875783)


Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Original strand, 35990167 - 35990628
Alignment:
Q  19 ctggtttcattttcagaagcagaatatagaaagtataaagatcctaaagtgccattgaatagaagaatcaaagatttaatgactagaatgactttggagg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35990167 ctggtttcattttcagaagcagaatatagaaagtataaagatcctaaagtgccattgaatagaagaatcaaagatttaatgagtagaatgactttggagg 35990266  T
Q  119 aaaagattggtcaaatgactcagcttgaaaggagtgttgctactcctgaagctatgaccaagtacttcattggtaaaatcattcatcactttgctaatca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35990267 aaaagattggtcaaatgactcagcttgaaaggagtgttgctactcctgaagctatgaccaagtacttcattggtaaaatcattcatcactttgctaatca 35990366  T
Q  219 aatctagtagttttttgtactgtttgatgttgtcatgtttttctgatttctgaatctgagcatgtgatgatagatttgtgtaaagtgtactatgtagcac 318  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35990367 aatctagtagttttttgtactgtttgatgttgtcatgtttctctgatttctgaatctgagcatgtgatgatagatttgtgtaaagtgtactatgtagcac 35990466  T
Q  319 taacacttcagatcaaatgtgtgtggtagactggtagtgtcggtgtccaacacttactcgacactgacacatgtggtgacattcagttattttattttct 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35990467 taacacttcagatcaaatgtgtgtggtagactggtagtgtcggtgtccaacacttactcgacactgacacatgtggttacattcagttattttattttct 35990566  T
Q  419 caagttattatcagtgttgacggggtagtgtggtgtctggtgtcagtgtttcgtagaaatgg 480  Q
    ||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  35990567 caaattattatcagtgtcgacggggtagtgtggtgtctggtgttagtgtttcgtagaaatgg 35990628  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 537
Target Start/End: Original strand, 35990654 - 35990684
Alignment:
Q  507 gtttgctgtaatgagttgattttatggatgt 537  Q
    |||||||||||||||||||||||||||||||    
T  35990654 gtttgctgtaatgagttgattttatggatgt 35990684  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 439
Target Start/End: Original strand, 18268007 - 18268067
Alignment:
Q  379 acactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgttgac 439  Q
    |||| |||||||||| | || |||| ||| || |||||||||| |||||||||||||||||    
T  18268007 acaccgacacatgtgattacgttcaattaattcattttctcaaattattatcagtgttgac 18268067  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 435
Target Start/End: Complemental strand, 51733201 - 51733145
Alignment:
Q  379 acactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgt 435  Q
    |||| ||||||| |||| || |||| ||||| |||||||||||||||||||| ||||    
T  51733201 acaccgacacatctggtaacgttcaattattctattttctcaagttattatcggtgt 51733145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 11248085 - 11248033
Alignment:
Q  106 atgactttggaggaaaagattggtcaaatgactcagcttgaaaggagtgttgc 158  Q
    |||||||||||||| ||||||||||| ||||||||| |||| |||||||||||    
T  11248085 atgactttggaggagaagattggtcagatgactcagattgataggagtgttgc 11248033  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 43328546 - 43328468
Alignment:
Q  357 gtcggtgtccaacacttactcgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgt 435  Q
    |||||||||| ||||  || ||||| ||||||||||||| ||||| | |||||| |||||||||| ||||||| |||||    
T  43328546 gtcggtgtccgacaccaacacgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtgt 43328468  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 26462652 - 26462708
Alignment:
Q  384 gacacatgtggtgacattcagttattttattttctcaagttattatcagtgttgacg 440  Q
    |||||||||| | ||||||| |||||| ||||||| || ||||||||||||| ||||    
T  26462652 gacacatgtgattacattcaattatttcattttcttaaattattatcagtgtcgacg 26462708  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 431
Target Start/End: Original strand, 43609796 - 43609872
Alignment:
Q  355 gtgtcggtgtccaacacttactcgacactgacacatgtggtgacattcagttattttattttctcaagttattatca 431  Q
    |||||||||||||||| | |  | |||  |||||||||| | ||||||| |||| |||||||||||| |||||||||    
T  43609796 gtgtcggtgtccaacattgatacaacatggacacatgtgattacattcaattatgttattttctcaaattattatca 43609872  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 437
Target Start/End: Complemental strand, 31614195 - 31614135
Alignment:
Q  377 cgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgttg 437  Q
    |||||||||||||| |||| ||| | |||||||| ||||||||||  ||||||||||||||    
T  31614195 cgacactgacacatatggttacaattagttatttcattttctcaaactattatcagtgttg 31614135  T

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Target: scaffold0205 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 421
Target Start/End: Complemental strand, 21473 - 21431
Alignment:
Q  379 acactgacacatgtggtgacattcagttattttattttctcaa 421  Q
    ||||||| ||||||||| ||||||| |||||||||||||||||    
T  21473 acactgatacatgtggttacattcaattattttattttctcaa 21431  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 441
Target Start/End: Complemental strand, 2512799 - 2512757
Alignment:
Q  399 attcagttattttattttctcaagttattatcagtgttgacgg 441  Q
    ||||| ||||||||||||||||| |||||| ||||||||||||    
T  2512799 attcaattattttattttctcaaattattaccagtgttgacgg 2512757  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 435
Target Start/End: Original strand, 46179910 - 46179968
Alignment:
Q  377 cgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgt 435  Q
    |||||| |||||||||| | | ||||| ||| ||||||||||||| |||||||||||||    
T  46179910 cgacaccgacacatgtgattatattcaattaatttattttctcaacttattatcagtgt 46179968  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 433
Target Start/End: Original strand, 3262875 - 3262931
Alignment:
Q  377 cgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagt 433  Q
    |||||||||||||||||||  ||||||  ||||| | |||||||| |||||||||||    
T  3262875 cgacactgacacatgtggttgcattcaaatatttcactttctcaaattattatcagt 3262931  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 421
Target Start/End: Complemental strand, 24875783 - 24875739
Alignment:
Q  377 cgacactgacacatgtggtgacattcagttattttattttctcaa 421  Q
    ||||||||| ||||||||| ||||||| ||||| |||||||||||    
T  24875783 cgacactgatacatgtggttacattcaattattctattttctcaa 24875739  T

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