View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11175_low_7 (Length: 522)
Name: NF11175_low_7
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11175_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 19 - 509
Target Start/End: Original strand, 46332901 - 46333391
Alignment:
| Q |
19 |
tgattgagagtgtatcaactaaatcctacaaatgctagaacctatgagcttcatcatatatactaacaaaacaataagataaattcacaagaatgctaca |
118 |
Q |
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| T |
46332901 |
tgattgagagtgtatcaactaaatcctacaaatgctagaacctatgagcttcatcatatatactaacaaaacaataagataaattcacaagaatgctaca |
46333000 |
T |
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| Q |
119 |
agttatgaaattaacatactaataagagaaaatcacaaaaacattataggtatactatacatgaacaagagaagaaaaggggtatcttactctttcagaa |
218 |
Q |
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| T |
46333001 |
agttatgaaattaacatactaataagagaaaatcacaaaaacattataggtatactatacatgaacaagagaagaaaaggggtatcttactctttcagaa |
46333100 |
T |
|
| Q |
219 |
tagcaacagggttaccctttgaatcaaaaagagcaacttttgtagattcaccgatccgatgtttctgatcatcatcaatagccaaaacaataggaacaga |
318 |
Q |
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| T |
46333101 |
tagcaacagggttaccctttgaatcaaaaagagcaacttttgtagattcaccgatccgatgtttctgatcatcatcaatagccaaaacaataggaacaga |
46333200 |
T |
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| Q |
319 |
catattcacaaaagacccatcattgagtctaagtgaattgaaatgaagcgtttggaggaactctctttctctcatgaaaccaccaagtggggtagcccac |
418 |
Q |
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| T |
46333201 |
catattcacaaaagacccatcattgagtctaagtgaattgaaatgaagcgtttggaggaactctctttctctcatgaaaccaccaagtggggtagcccac |
46333300 |
T |
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| Q |
419 |
ccttcactcagcacatgaacccattcaacatcaatctttgaaagctttatccttggcaatgataaagcttcaccctttttcaaatctctct |
509 |
Q |
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| T |
46333301 |
ccttcactcagcacatgaacccattcaacgtcaatctttgaaagctttatccttggcaatgataaagcttcgccctttttcaaatctctct |
46333391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 6010910 - 6010834
Alignment:
| Q |
287 |
tcatcatcaatagccaaaacaataggaacagacatattcacaaaagacccatcattgagtctaagtgaattgaaatg |
363 |
Q |
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||||||||||||| |||||||||||||| |||||||| |||||||| |||||||| | ||||||||||| ||||| |
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| T |
6010910 |
tcatcatcaatagacaaaacaataggaagtgacatattaacaaaagaaccatcattcaacctaagtgaattaaaatg |
6010834 |
T |
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