View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11175_low_8 (Length: 503)
Name: NF11175_low_8
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11175_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 15 - 485
Target Start/End: Original strand, 36016757 - 36017227
Alignment:
| Q |
15 |
catagggtaactacccaaaactctcaagaaagacgtgaattcctgaacttcagccaacgcgttttgtgctctaacttcagccattgaagcttcaaaatca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36016757 |
catagggtaactacccaaaactctcaagaaagacgtgaattcctgaacttcagccaacgcgttttgtgctctaacttcagccattgaagcttcaaaatca |
36016856 |
T |
|
| Q |
115 |
acataaaacaaatactcaaaatgcttcgcagttccaacatttgcatcatcaacaagcctaatcggacggttacgatgtggccttgattcaatcttcgtta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36016857 |
acataaaacaaatactcaaaatgcttcgcagttccaacatttgcatcatcaacaagcctaatcggacggttacgatgtggccttgattcaatcttcgtta |
36016956 |
T |
|
| Q |
215 |
aactaatattcctaaacgcaaaagctgaaagcactttgaaaagcaccgaagttcctttatcatgagcgaaaacaatacttgttttaaatggacgatccgt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36016957 |
aactaatattcctaaacgcaaaagctgaaagcactttgaaaagcactgaagttcctttatcatgagcgaaaacaatacttgttttaaatggacgatccgt |
36017056 |
T |
|
| Q |
315 |
acgtggaattatgggttctcgggccaacataacgaatcgggttacgttacttgggtcatcttgaattccatctgctaagatatttaatccataaagctcg |
414 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36017057 |
acgtggaattatgggttctctggccaacataacgaatcgggttacgttacttgggtcatcttgaattccatctgctaagatatttaatccataaagctcg |
36017156 |
T |
|
| Q |
415 |
gctgcacgtgcgctggcgatagccgcagtgtcgcggagattgttagtcgcaacaaactccgcggcacctgc |
485 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
36017157 |
gctgcacgtgcgctggcgatagcagcagtgtcgcggagattgttagttgcaacaaactccgcagcacctgc |
36017227 |
T |
|
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Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 487
Target Start/End: Complemental strand, 20138231 - 20137759
Alignment:
| Q |
15 |
catagggtaactacccaaaactctcaagaaagacgtgaattcctgaacttcagccaacgcgttttgtgctctaacttcagccattgaagcttcaaaatca |
114 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||| || || || ||||||||||| | || |||||||| ||||| |||||||| ||||| ||||||||| |
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| T |
20138231 |
cataggataactccccaaaactcttaagaaagatgtaaactcttgaacttcagcaagtgcattttgtgccctaacctcagccatagaagcctcaaaatca |
20138132 |
T |
|
| Q |
115 |
acataaaacaaatactcaaaatgcttcgcagttccaacatttgcatcatcaacaagcctaatcggacggttacgatgtggccttgattcaatcttcgtta |
214 |
Q |
| |
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| |||||||| |||||||||||| || || ||||| || || ||||||| |||| | |||||||||| |||||| ||||| ||||||||||| |||| |
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| T |
20138131 |
atataaaacatatactcaaaatgtttagctgttccttcactttcatcatccacaactcgaatcggacggccacgatgaggcctagattcaatcttagtta |
20138032 |
T |
|
| Q |
215 |
aactaatattcctaaacgcaaaagctgaaagcactttgaaaagcaccgaagttcctttatcatgagcgaaaacaatacttgttttaaatggacgatccgt |
314 |
Q |
| |
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| || |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||| || |
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| T |
20138031 |
agctgatattcctaaacgcaaaagctgaaagcactttaaaaagcactgaagttcctttatcatgagcaaaaacaatacttgttttgaaaggacgatcggt |
20137932 |
T |
|
| Q |
315 |
acgtggaattatgggttctcgggccaacataacgaatcgggttacgttacttgggtcatcttgaattccatctgctaagatatttaatccataaagctcg |
414 |
Q |
| |
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| |||||| |||||||||| ||||||||||| || || || |||||| |||| |||||||| |||||||| ||||||||||||||||| |||||||| |
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| T |
20137931 |
tcttggaataatgggttctcttgccaacataacaaaccgtgtcacgttatttggatcatcttgtattccatcagctaagatatttaatccgtaaagctct |
20137832 |
T |
|
| Q |
415 |
gctgcacgtgcgctggcgatagccgcagtgtcgcggagattgttagtcgcaacaaactccgcggcacctgctg |
487 |
Q |
| |
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|| || ||||||||||||||||| |||||||||||||| || || | | || ||||||||||||||| |||| |
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|
| T |
20137831 |
gcagcgcgtgcgctggcgatagcagcagtgtcgcggaggttatttgcagtaataaactccgcggcaccagctg |
20137759 |
T |
|
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