View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11176_high_4 (Length: 445)

Name: NF11176_high_4
Description: NF11176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11176_high_4
NF11176_high_4
[»] chr2 (1 HSPs)
chr2 (5-404)||(14434938-14435354)
[»] chr1 (1 HSPs)
chr1 (44-352)||(18706066-18706370)
[»] chr5 (5 HSPs)
chr5 (44-176)||(35201418-35201551)
chr5 (76-333)||(35869670-35869923)
chr5 (4-35)||(35201364-35201395)
chr5 (238-283)||(35201598-35201644)
chr5 (6-43)||(35870254-35870291)
[»] chr8 (4 HSPs)
chr8 (52-142)||(28339052-28339144)
chr8 (307-363)||(21590472-21590528)
chr8 (3-43)||(28338989-28339029)
chr8 (52-104)||(25200113-25200165)
[»] chr7 (1 HSPs)
chr7 (226-358)||(36386567-36386701)
[»] chr4 (4 HSPs)
chr4 (306-363)||(10698258-10698315)
chr4 (306-363)||(10912025-10912082)
chr4 (306-362)||(10673844-10673900)
chr4 (306-362)||(10887484-10887540)
[»] chr6 (3 HSPs)
chr6 (87-211)||(6857809-6857936)
chr6 (305-363)||(32008935-32008993)
chr6 (3-39)||(6857997-6858033)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 5 - 404
Target Start/End: Complemental strand, 14435354 - 14434938
Alignment:
Q  5 aaataaaattccccaaacttgcaagaatctatgaggagcgacatca--------------gtgaaagcaaataaaagacacaagagaacaccaatgtttt 90  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||              |||||||||||||||||||| ||||||||| |||||||||    
T  14435354 aaataaaattccccaaacttgcaagaatctatgaggagcgacaacaaataaacgacagcagtgaaagcaaataaaagacataagagaacatcaatgtttt 14435255  T
Q  91 aatgtggaaaacccctcactttaagggtaaaaatca--agtcgtccagaccaatgaaatagctccactataatcaaacatgggtacaaaagagtctaaaa 188  Q
    |||||||||||||||| ||| |||||||||||| ||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14435254 aatgtggaaaaccccttactgtaagggtaaaaaccacgagtcgtccagaccaatgaaatagatccactataatcaaacatgggtacaaaagagtctaaaa 14435155  T
Q  189 aatg-tgcacaaatagtgcaaactgccaacaactagccaaaacaacacagcaacaaagcttgcaaatgagaacaaaaagatgaaaatactctaaaagtac 287  Q
    |||| |||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14435154 aatgatgcacaaatagtgccaactgccagcaactagccaaaacaacaaagcaacaaagcttgcaaatgagaacaaaaagatgaaaatactctaaaagtac 14435055  T
Q  288 tgcttctatgtgtgacgaatttctctcagctcaggccttgtttcgacgatccaaacagtgaaaagatagacccaggaaatcagcccaatccaacggttaa 387  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||    
T  14435054 tgcttctgtgtgtggcgaatttctctcagctcaggccttgtttcgacgatccaaacggtgaaaaggtagacccaggaaatcagcccgatccaacggttaa 14434955  T
Q  388 cgagttgaaataattgt 404  Q
    ||||||||||| |||||    
T  14434954 cgagttgaaatcattgt 14434938  T

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Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 44 - 352
Target Start/End: Original strand, 18706066 - 18706370
Alignment:
Q  44 gacatcagtgaaagcaaataaaagacacaagagaacaccaatgttttaatgtggaaaacccctcactttaagggtaaaaatca--agtcgtccagaccaa 141  Q
    |||| |||||||||||||||||||||||||| |||||   || |||||| ||||||||||||||| | |||||||||||| ||  |||| |||| |||||    
T  18706066 gacagcagtgaaagcaaataaaagacacaagtgaacattgatattttaacgtggaaaacccctcaatgtaagggtaaaaaccacgagtcatccataccaa 18706165  T
Q  142 tgaaatagctccactataatcaaacatgggtacaaaagagtctaaaaaatg-tgcacaaatagtgcaaactgccaacaactagccaaaacaacacagcaa 240  Q
    ||||| | | |||||||||||||| |||| || || ||||||| |||| || ||| |||||||       |||||||||||||||  ||||||| |||||    
T  18706166 tgaaacaacaccactataatcaaatatggatataagagagtctcaaaagtgatgcgcaaatag-------tgccaacaactagccggaacaacaaagcaa 18706258  T
Q  241 caaagcttgcaaatgagaac-aaaaagatgaaaatactctaaaagtactgcttctatgtgtgacgaatttctctcagctcaggccttgtttcgacgatcc 339  Q
    ||||||||  |||||||||| |||||||||||||||| | ||||||||||||||  || | ||| | ||||||||| ||||| ||| |||||||||||||    
T  18706259 caaagcttataaatgagaacaaaaaagatgaaaatac-ccaaaagtactgcttcagtgcgagacaactttctctcatctcagacctggtttcgacgatcc 18706357  T
Q  340 aaacagtgaaaag 352  Q
     ||| ||||||||    
T  18706358 gaacggtgaaaag 18706370  T

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Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 176
Target Start/End: Original strand, 35201418 - 35201551
Alignment:
Q  44 gacatcagtgaaagcaaataaaagacacaagagaacaccaatgttttaatgtggaaaacccctcactttaagggtaaaaatca--agtcgtccagaccaa 141  Q
    |||| ||| |||||||||||||||||||||| |||||||||| |||||| |||||||| |||||| | |||||||||||| ||   ||||||| ||||||    
T  35201418 gacaacagggaaagcaaataaaagacacaagcgaacaccaatattttaacgtggaaaa-ccctcaatgtaagggtaaaaaccacgggtcgtcctgaccaa 35201516  T
Q  142 tgaaatagctccactataatcaaacatgggtacaa 176  Q
    |||||||||||||||||||||||| ||||||||||    
T  35201517 tgaaatagctccactataatcaaatatgggtacaa 35201551  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 333
Target Start/End: Complemental strand, 35869923 - 35869670
Alignment:
Q  76 gaacaccaatgttttaatgtggaaaacccctcactttaagggtaaaaatcaag-tcgtccagaccaatgaaatagctccactataatcaaacatgggtac 174  Q
    |||||||||| |||||| ||  |||||||||||   ||||| |||||| |||  |||||||||||||||||||||||| | |||||||||| | |||||     
T  35869923 gaacaccaatattttaacgta-aaaacccctcaaagtaaggataaaaaccaaaatcgtccagaccaatgaaatagctcaattataatcaaatacgggtaa 35869825  T
Q  175 aaaagagtctaaaaaatg-tgcacaaatagtgcaaactgccaacaactagccaaaacaacacagcaacaaagcttgcaaatgagaacaa-aaagat-gaa 271  Q
       |||||||  ||| || ||||||||| |||        |||||||||||||||||||||  |||||||||||| ||||||||||||| |||||| |||    
T  35869824 tggagagtctgcaaagtgatgcacaaatggtgg-------caacaactagccaaaacaacaatgcaacaaagcttacaaatgagaacaagaaagatagaa 35869732  T
Q  272 aatactctaaaagtactgcttctatgtgtgacgaatttctctcagctcaggccttgtttcga 333  Q
    ||||| |||||| |||| |||| ||| | ||||||||||||| |||| || |||||||||||    
T  35869731 aataccctaaaaatactacttcaatgcgagacgaatttctcttagctgagaccttgtttcga 35869670  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 35201364 - 35201395
Alignment:
Q  4 gaaataaaattccccaaacttgcaagaatcta 35  Q
    ||||||||||||||||||||||||||||||||    
T  35201364 gaaataaaattccccaaacttgcaagaatcta 35201395  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 35201598 - 35201644
Alignment:
Q  238 caacaaagcttgcaaatgagaacaa-aaagatgaaaatactctaaaa 283  Q
    ||||||||||| ||||||||||||| |||||||||||||| ||||||    
T  35201598 caacaaagcttacaaatgagaacaagaaagatgaaaataccctaaaa 35201644  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 35870291 - 35870254
Alignment:
Q  6 aataaaattccccaaacttgcaagaatctatgaggagc 43  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  35870291 aataaaattctccaaacttgcaagaatgtatgaggagc 35870254  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 28339052 - 28339144
Alignment:
Q  52 tgaaagcaaataaaagacacaagagaacaccaatgttttaatgtggaaaacccctcactttaagggtaaaaatca--agtcgtccagaccaat 142  Q
    ||||||||||||||||| ||||| ||||||| |  |||||||||||||||||||||| | |||||||||||| ||  ||||||||| ||||||    
T  28339052 tgaaagcaaataaaagatacaagtgaacaccgaaattttaatgtggaaaacccctcaatgtaagggtaaaaaccacgagtcgtccaaaccaat 28339144  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 21590528 - 21590472
Alignment:
Q  307 tttctctcagctcaggccttgtttcgacgatccaaacagtgaaaagatagacccagg 363  Q
    ||||||||| ||||| ||||||||||||||||| ||| |||||||  ||||||||||    
T  21590528 tttctctcaactcagaccttgtttcgacgatccgaacggtgaaaacgtagacccagg 21590472  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 28338989 - 28339029
Alignment:
Q  3 ggaaataaaattccccaaacttgcaagaatctatgaggagc 43  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  28338989 ggaaataaaatttctcaaacttgcaagaatctatgaggagc 28339029  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 25200165 - 25200113
Alignment:
Q  52 tgaaagcaaataaaagacacaagagaacaccaatgttttaatgtggaaaaccc 104  Q
    ||||||||||||||||||||||| ||||||| || |||||   ||||||||||    
T  25200165 tgaaagcaaataaaagacacaagtgaacaccgatattttacactggaaaaccc 25200113  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 358
Target Start/End: Complemental strand, 36386701 - 36386567
Alignment:
Q  226 aaaacaacacagcaacaaagcttgcaaatgagaacaa-aaagatgaaaa-tactctaaaagtactgcttctatgtgtgacgaatttctctcagctcaggc 323  Q
    ||||||| | ||||||||||||| |||||||||| || |||||| |||| |||  ||||| |||  ||||  || | ||||||||||||| | ||||| |    
T  36386701 aaaacaagaaagcaacaaagcttacaaatgagaataagaaagataaaaaataccttaaaaatacaacttcagtgcgagacgaatttctcttaactcagac 36386602  T
Q  324 cttgtttcgacgatccaaacagtgaaaagatagac 358  Q
    |||||||||| |||||||||||||||||| |||||    
T  36386601 cttgtttcgaagatccaaacagtgaaaaggtagac 36386567  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 10698258 - 10698315
Alignment:
Q  306 atttctctcagctcaggccttgtttcgacgatccaaacagtgaaaagatagacccagg 363  Q
    |||||||||| ||||| |||||||||||| |||||||| |||||||| ||||||||||    
T  10698258 atttctctcaactcagaccttgtttcgacaatccaaacggtgaaaaggtagacccagg 10698315  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 10912025 - 10912082
Alignment:
Q  306 atttctctcagctcaggccttgtttcgacgatccaaacagtgaaaagatagacccagg 363  Q
    |||||||||| ||||| |||||||||||| |||||||| |||||||| ||||||||||    
T  10912025 atttctctcaactcagaccttgtttcgacaatccaaacggtgaaaaggtagacccagg 10912082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 10673900 - 10673844
Alignment:
Q  306 atttctctcagctcaggccttgtttcgacgatccaaacagtgaaaagatagacccag 362  Q
    |||| ||||| ||||| |||||||||||||||||| || || ||||| |||||||||    
T  10673900 atttttctcaactcagaccttgtttcgacgatccagacggtcaaaaggtagacccag 10673844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 10887540 - 10887484
Alignment:
Q  306 atttctctcagctcaggccttgtttcgacgatccaaacagtgaaaagatagacccag 362  Q
    |||| ||||| ||||| |||||||||||||||||| || || ||||| |||||||||    
T  10887540 atttttctcaactcagaccttgtttcgacgatccagacggtcaaaaggtagacccag 10887484  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 211
Target Start/End: Complemental strand, 6857936 - 6857809
Alignment:
Q  87 ttttaatgtggaaaacccctcactttaagggtaaaaatcaa--gtcgtccagaccaatgaaatagctccactataatcaaacatgggtacaaaagagtct 184  Q
    |||||| |||||||| |||| | | |||||||||||| ||   ||||||||||| || ||||||||||||| ||||| ||| || ||||||| ||||||     
T  6857936 ttttaacgtggaaaaacccttaatgtaagggtaaaaaccatcggtcgtccagacaaacgaaatagctccacaataataaaaaataggtacaagagagtcc 6857837  T
Q  185 aaaaaatg-tgcacaaatagtgcaaact 211  Q
     |||| || |||||||||||||| ||||    
T  6857836 caaaagtgatgcacaaatagtgccaact 6857809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 32008993 - 32008935
Alignment:
Q  305 aatttctctcagctcaggccttgtttcgacgatccaaacagtgaaaagatagacccagg 363  Q
    ||||||||| | ||||  ||||||||||||||||||||| |||||||| ||||||||||    
T  32008993 aatttctcttaactcaaaccttgtttcgacgatccaaacggtgaaaaggtagacccagg 32008935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 6858033 - 6857997
Alignment:
Q  3 ggaaataaaattccccaaacttgcaagaatctatgag 39  Q
    |||||||||||| ||||||||||||||||||||||||    
T  6858033 ggaaataaaatttcccaaacttgcaagaatctatgag 6857997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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