View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11176_high_5 (Length: 387)
Name: NF11176_high_5
Description: NF11176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11176_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 94 - 367
Target Start/End: Original strand, 44523853 - 44524126
Alignment:
| Q |
94 |
ctctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagtacatgttac |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
44523853 |
ctctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatgtctctaaagtacatgttac |
44523952 |
T |
|
| Q |
194 |
acttacatatatatgttgaataaccaacggtaataaacatggtataaagagatatacattaagtgtcttcatagctattatttgcttttgataagccaac |
293 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44523953 |
acttacatatatatgtcgaataaccaacggtaataaacatgatataaagagatatacattaagtgtcttcatggctattatttgcttttgataagccaac |
44524052 |
T |
|
| Q |
294 |
ggtaataaacatcatataaggaaatatacttatggtttgactccatgtattaatgcattgcattcacacatatt |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
44524053 |
agtaataaacatcatataaggaaatatacttatggtttgactccatgtattaaggcattacattcacacatatt |
44524126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 97 - 256
Target Start/End: Complemental strand, 41322264 - 41322105
Alignment:
| Q |
97 |
taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagtacatgttacact |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||||| |
|
|
| T |
41322264 |
taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgttcactgatatctctaaagtacatgttacact |
41322165 |
T |
|
| Q |
197 |
tacatatatatgttgaataaccaacggtaataaacatggtataaagagatatacattaag |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41322164 |
tacatatatatgttgaataaccaacggtaataaacatgatataaagagatatacattaag |
41322105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 253 - 367
Target Start/End: Complemental strand, 41319115 - 41319001
Alignment:
| Q |
253 |
taagtgtcttcatagctattatttgcttttgataagccaacggtaataaacatcatataaggaaatatacttatggtttgactccatgtattaatgcatt |
352 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41319115 |
taagtgtcttcatggctattatttgcttttgataagtcaacggtaataaacatcatataagtaaatatacttatggtttgactccatgtattaaggcatt |
41319016 |
T |
|
| Q |
353 |
gcattcacacatatt |
367 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
41319015 |
gcattcacacatatt |
41319001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 37726240 - 37726150
Alignment:
| Q |
95 |
tctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagta |
185 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| || || |||||||| |
|
|
| T |
37726240 |
tctaatgaaaataaaaatatgatatgaacaatggacagtggctagaatgtaatctggtttgtatattatgtccactgatatctctaaagta |
37726150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 96 - 364
Target Start/End: Original strand, 12503202 - 12503476
Alignment:
| Q |
96 |
ctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagtacatgttacac |
195 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||||| || ||| |||||||||| |||||||||||||||||||||||| || ||| |||||||||||| |
|
|
| T |
12503202 |
ctaatgaaagtaaaaatatgatatggacaatggactgtagctagaatgtaatctggtttgtatattatgtccactaatctctctacagtacatgttac-- |
12503299 |
T |
|
| Q |
196 |
ttacatatatatgttgaataaccaacggtaataaacatggtataaagagatatacattaagtgtcttcatagctattatttgcttttgataagccaacgg |
295 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||| ||||| || |||||||||||||| ||| || |||||||||| |||||||||||||||||| |
|
|
| T |
12503300 |
----atatatatgactaatagccaacggtaatgcacatgatataaggaaatatacattaagtggctttatggctattatttccttttgataagccaacgg |
12503395 |
T |
|
| Q |
296 |
taataaacatcatataaggaaatatactta------------tggtttgactccatgtattaatgcattgcattcacacat |
364 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
12503396 |
taataaaccatatataaggaaatatacttaagtgcctctatttggtttgactccatgtatcaaggcattgcattcacacat |
12503476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 3800289 - 3800200
Alignment:
| Q |
3 |
cataggtatatccggggagatttgaatttcttgttttttggttggatttcctgcaatgccaaaacgagatcatggaatatttgatgttga |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3800289 |
cataggtatatccggggagatttgaatttcttgttttttggttggatttcctgcaatgccaaaacgagatcatgaaatatttgatgttga |
3800200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 3789815 - 3789888
Alignment:
| Q |
3 |
cataggtatatccggggagatttgaatttcttgttttttggttggatttcctgcaatgccaaaacgagatcatg |
76 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||||||||| |
|
|
| T |
3789815 |
cataggtatatcaggggagatttgaatttcttgttttttggtgggatttcctacaatgcgaaaaggagatcatg |
3789888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University