View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11176_low_10 (Length: 342)

Name: NF11176_low_10
Description: NF11176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11176_low_10
NF11176_low_10
[»] chr1 (2 HSPs)
chr1 (1-329)||(7100555-7100868)
chr1 (1-329)||(7580372-7580691)
[»] chr5 (22 HSPs)
chr5 (2-329)||(17984019-17984352)
chr5 (1-319)||(29854445-29854763)
chr5 (1-319)||(30476509-30476827)
chr5 (1-59)||(17417507-17417565)
chr5 (1-335)||(30520263-30520597)
chr5 (1-335)||(30560603-30560937)
chr5 (1-319)||(29873308-29873626)
chr5 (4-66)||(30061509-30061571)
chr5 (4-66)||(30337432-30337494)
chr5 (178-300)||(30401388-30401510)
chr5 (4-66)||(30750783-30750845)
chr5 (192-300)||(30207847-30207955)
chr5 (192-318)||(30329496-30329622)
chr5 (179-286)||(30675975-30676082)
chr5 (3-61)||(30241293-30241351)
chr5 (4-66)||(30676195-30676257)
chr5 (246-319)||(30241047-30241120)
chr5 (1-68)||(30207656-30207723)
chr5 (178-300)||(17417341-17417463)
chr5 (174-210)||(30061679-30061715)
chr5 (174-210)||(30484708-30484744)
chr5 (174-210)||(30750953-30750989)
[»] chr4 (3 HSPs)
chr4 (174-319)||(52353268-52353413)
chr4 (2-252)||(13617734-13617987)
chr4 (268-329)||(13617991-13618052)
[»] chr3 (1 HSPs)
chr3 (1-319)||(25292601-25292919)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 7100555 - 7100868
Alignment:
Q  1 catcttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccacttcagttggttgttgcgtaacagtaacaccttctcg 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100555 catcttctcgtccaaacatctttggttcagcaataaaggagctggtttggcgccattcagccacttcagttggttgttgcgtaacagtaacaccttctcg 7100654  T
Q  101 tagcgtaaaattcttcttaccttctgcaatatgactgagtctgctagtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttggt 200  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7100655 tagcataaaattcttcttaccttcggcaatatgactgagtctgctagtaatttcattcaacctactgcctatgtaatggcgaaacatgacattctttggt 7100754  T
Q  201 ttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccata 300  Q
    ||||||||||||||||||               |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  7100755 ttgaaagaggataagccc---------------ttgatggaacattcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcagccata 7100839  T
Q  301 tttgaatagagcggtctgttaattgcttc 329  Q
    |||||||||||||||||||||||||||||    
T  7100840 tttgaatagagcggtctgttaattgcttc 7100868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 7580691 - 7580372
Alignment:
Q  1 catcttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccacttcagttggttgttgcgtaacagtaacaccttctcg 100  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||| |||||| ||  ||||||  || |||||||||    
T  7580691 catcttctcgtccaaacacctttggttcggcaataatggagctggtttggcgccagtcagccacttcaattggtttttctgtaacaacaataccttctcg 7580592  T
Q  101 tagcgtaaaattcttcttaccttctgcaatatgactgagtctgctagtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttggt 200  Q
    ||    ||| || ||||||  ||| ||||| ||  |||||||||| | ||| || ||||||||| ||||||  ||| | ||||||||||| |||||| ||    
T  7580591 taaaagaaacttgttcttattttcagcaatttggttgagtctgcttgcaatctctttcaacctagtgcctaaatcacgtcgaaacatgacgttctttagt 7580492  T
Q  201 ttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccata 300  Q
    ||||||         ||||| ||||||  |||||||||  |||| |||||||||||||||||||| |||||||| ||||||||||||||||||| |||||    
T  7580491 ttgaaa---------cccttgagtcgactggatttgattaaacactcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcaaccata 7580401  T
Q  301 tttgaatagagcggtctgttaattgcttc 329  Q
    |||||||||| ||||| ||||||||||||    
T  7580400 tttgaatagatcggtcagttaattgcttc 7580372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 2 - 329
Target Start/End: Original strand, 17984019 - 17984352
Alignment:
Q  2 atcttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccacttcagttggt---tgttgcgtaacagtaacaccttct 98  Q
    |||||||||||||||||| |||| ||||||||||| || |||||||||||||||||||||||||||| |||||   | || ||||||||||| |||||||    
T  17984019 atcttctcgtccaaacacttttgattcagcaataacggggctggtttggcgccattcagccacttcacttggtaatttttccgtaacagtaataccttct 17984118  T
Q  99 cgtagcgtaaaattcttcttaccttctgcaatatgactgagtctgctagtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttg 198  Q
    |||||| ||||||||||||||||||| ||||||| |  |||||| || | ||| || ||||||||||||||||||||| ||||||||||||  |||||||    
T  17984119 cgtagcataaaattcttcttaccttcagcaatataatcgagtctacttgcaatctctttcaacctactgcctatgtcacggcgaaacatgaagttctttg 17984218  T
Q  199 gtttga---aagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcag 295  Q
    | ||||   |||||||| | | ||||| | ||| ||||||||| ||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||    
T  17984219 gattgatgaaagaggatgaactcttaaattgagtggatttgatcgaacattcatctaggatatcatcaagcacaaacaccgcatctttgagttgctgcag 17984318  T
Q  296 ccatatttgaatagagcggtctgttaattgcttc 329  Q
    ||||||||||||||| || ||||| || ||||||    
T  17984319 ccatatttgaatagaacgatctgtcaaatgcttc 17984352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 29854445 - 29854763
Alignment:
Q  1 catcttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccacttcagttggttgttgcgtaacagtaacaccttctcg 100  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| |||||| |||    || | ||||| ||  ||| || ||    
T  29854445 catcttctcgtccaaacacttttggttcagcaataatggagctggtttgacgccattcagctacttcatttgagctttccttaacaatagtaccctcccg 29854544  T
Q  101 tagcgtaaaattcttcttaccttctgcaatatgactgagtctgctagtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttggt 200  Q
    |||   ||| || |||||||  || ||||||| |   | | | || ||||| || ||||||||  |||| || ||||||||||||||||  |||||||||    
T  29854545 tagaaaaaacttgttcttactatcagcaatatcatccaatttccttgtaatctctttcaacctgttgccgatctcatggcgaaacatgatgttctttggt 29854644  T
Q  201 ttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccata 300  Q
    |||||||||| ||| ||  ||||| || | || ||||| ||||| ||||||||||||||||| || ||||| || |||||||||||||| || |||||||    
T  29854645 ttgaaagaggttaatcctctaagttgaccagacttgattgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccata 29854744  T
Q  301 tttgaatagagcggtctgt 319  Q
      | ||||||| |||||||    
T  29854745 ccttaatagagtggtctgt 29854763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 30476509 - 30476827
Alignment:
Q  1 catcttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccacttcagttggttgttgcgtaacagtaacaccttctcg 100  Q
    ||||| ||||||||||||| || ||||||||||||| |||||| ||||||||||||||||| |||||| ||||   || | |||||   ||||| |||||    
T  30476509 catctactcgtccaaacactttgggttcagcaataatggagcttgtttggcgccattcagcaacttcatttggcctttccctaacaacgacaccctctcg 30476608  T
Q  101 tagcgtaaaattcttcttaccttctgcaatatgactgagtctgctagtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttggt 200  Q
    ||    ||| || |  |||| ||| ||||| |||  || ||| || |||||||| ||||||||  |||| |||||| |||||||||  |  |||||| |     
T  30476609 taaaagaaacttgtctttactttcagcaatttgatcgaatctccttgtaatttctttcaaccttttgccgatgtcacggcgaaacacaatgttctttagg 30476708  T
Q  201 ttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccata 300  Q
    |||||| ||||  || | ||||||| |   ||||  ||||||||||||||||| ||||||||||| ||||| || |||||||||||||| || |||||||    
T  30476709 ttgaaacaggacgaggctttaagtctactagattcaatggaacattcatcaagaatatcatcaagcacatatacagcatctttgagttgttggagccata 30476808  T
Q  301 tttgaatagagcggtctgt 319  Q
      | |||||||||||||||    
T  30476809 ccttaatagagcggtctgt 30476827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17417565 - 17417507
Alignment:
Q  1 catcttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattca 59  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17417565 catcttcccgtccaaacacctttggttcagcaataaaggagctggtttggcgccattca 17417507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 30520597 - 30520263
Alignment:
Q  1 catcttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccacttcagttggttgttgcgtaacagtaacaccttctcg 100  Q
    |||||||||| ||| | || ||||||||||||||||  ||||| ||||| |||||||||||||| |   |||    || | |||||| ||||| |||| |    
T  30520597 catcttctcgaccatatacttttggttcagcaataatagagctagtttgacgccattcagccacattgattgacctttccctaacagcaacacattcttg 30520498  T
Q  101 tagcgtaaaattcttcttaccttctgcaatatgactgagtctgctagtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttggt 200  Q
    |||   ||| || || |||| ||| ||||||| |  || |||| | |||||||| || |||||| |||| || | |||||||||||||| |||||||  |    
T  30520497 tagaagaaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaacatgatattctttaat 30520398  T
Q  201 ttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccata 300  Q
     | ||||| |||| ||||||  |||||| |||||  |||||||| |||||||| |||||||| || |  || | ||||||||||||||| || |||||||    
T  30520397 gtaaaagaagatatgcccttttgtcgagtggattgaatggaacactcatcaagaatatcatctagtatgtagattgcatctttgagttgttgaagccata 30520298  T
Q  301 tttgaatagagcggtctgttaattgcttcatctca 335  Q
      |  |||||||||||||||| ||| ||| |||||    
T  30520297 cctttatagagcggtctgttatttgtttcttctca 30520263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 30560937 - 30560603
Alignment:
Q  1 catcttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccacttcagttggttgttgcgtaacagtaacaccttctcg 100  Q
    |||||||||| ||| | || ||||||||||||||||  ||||| ||||| |||||||||||||| |   |||    || | |||||| ||||| |||| |    
T  30560937 catcttctcgaccatatacttttggttcagcaataatagagctagtttgacgccattcagccacattgattgacctttccctaacagcaacacattcttg 30560838  T
Q  101 tagcgtaaaattcttcttaccttctgcaatatgactgagtctgctagtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttggt 200  Q
    |||   ||| || || |||| ||| ||||||| |  || |||| | |||||||| || |||||| |||| || | |||||||||||||| |||||||  |    
T  30560837 tagaagaaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaacatgatattctttaat 30560738  T
Q  201 ttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccata 300  Q
     | ||||| |||| ||||||  |||||| |||||  |||||||| |||||||| |||||||| || |  || | ||||||||||||||| || |||||||    
T  30560737 gtaaaagaagatatgcccttttgtcgagtggattgaatggaacactcatcaagaatatcatctagtatgtagattgcatctttgagttgttgaagccata 30560638  T
Q  301 tttgaatagagcggtctgttaattgcttcatctca 335  Q
      |  |||||||||||||||| ||| ||| |||||    
T  30560637 cctttatagagcggtctgttatttgtttcttctca 30560603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 29873308 - 29873626
Alignment:
Q  1 catcttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccacttcagttggttgttgcgtaacagtaacaccttctcg 100  Q
    |||||||||||||||| || ||||||||| |||||| |||||||||||| ||||||||||| |||||| |||    || | ||||| ||  ||| || ||    
T  29873308 catcttctcgtccaaatacttttggttcaacaataatggagctggtttgacgccattcagctacttcatttgagctttccttaacaatagtaccctcccg 29873407  T
Q  101 tagcgtaaaattcttcttaccttctgcaatatgactgagtctgctagtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttggt 200  Q
    |||   ||| || |||||||  || ||||||| |   | ||| || ||||| || ||||||||  |||| || ||| ||||||||||||  || ||||||    
T  29873408 tagaaaaaacttgttcttactatcagcaatatcatccaatctccttgtaatctctttcaacctgttgccgatctcaaggcgaaacatgatgttatttggt 29873507  T
Q  201 ttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccata 300  Q
    || ||||||  | | ||  ||||| || | || ||||| || || ||||||||||||||||| || ||||| ||  ||||||||||||| || |||||||    
T  29873508 ttaaaagagattgatcctctaagttgaccagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgtagccata 29873607  T
Q  301 tttgaatagagcggtctgt 319  Q
      | |||||||||||||||    
T  29873608 ccttaatagagcggtctgt 29873626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 30061509 - 30061571
Alignment:
Q  4 cttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccactt 66  Q
    |||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||| ||||    
T  30061509 cttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctactt 30061571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 30337494 - 30337432
Alignment:
Q  4 cttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccactt 66  Q
    |||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||| ||||    
T  30337494 cttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctactt 30337432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 30401388 - 30401510
Alignment:
Q  178 ggcgaaacatgacattctttggtttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgc 277  Q
    ||||||||| ||  |||||||| ||||||||| || ||||   ||||||||| || | ||| ||||| ||||||||||||||||| || ||||| || ||    
T  30401388 ggcgaaacacgatgttctttgggttgaaagagaatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagcacataaacagc 30401487  T
Q  278 atctttgagttgctgcagccata 300  Q
    |||||||||||| || |||||||    
T  30401488 atctttgagttgttggagccata 30401510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 30750783 - 30750845
Alignment:
Q  4 cttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccactt 66  Q
    |||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||| ||||    
T  30750783 cttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctactt 30750845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 300
Target Start/End: Original strand, 30207847 - 30207955
Alignment:
Q  192 ttctttggtttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgct 291  Q
    ||||||||||||||||| ||| || |  |||||||||| || | ||| || || ||||||||||||||||| || ||||| || |||||||||||||| |    
T  30207847 ttctttggtttgaaagatgatgaggcaataagtcgagcagactcgatcgagcactcatcaaggatatcatcgagcacataaacagcatctttgagttgtt 30207946  T
Q  292 gcagccata 300  Q
    | |||||||    
T  30207947 gtagccata 30207955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 318
Target Start/End: Complemental strand, 30329622 - 30329496
Alignment:
Q  192 ttctttggtttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgct 291  Q
    ||||||||||||||||||||| ||||  ||| |||| | || | |||  | || |||||||||||||||||||| ||||| |   ||||||||| ||| |    
T  30329622 ttctttggtttgaaagaggatgagcctctaattcgaccagactcgatcaagcactcatcaaggatatcatcaagcacatatatatcatctttgatttgtt 30329523  T
Q  292 gcagccatatttgaatagagcggtctg 318  Q
    | |||||||| | ||||||||||||||    
T  30329522 gaagccatatcttaatagagcggtctg 30329496  T

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Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 30676082 - 30675975
Alignment:
Q  179 gcgaaacatgacattctttggtttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgca 278  Q
    |||||||||||  ||||||||||||| ||||||| | ||  ||||| || | || ||||| ||| | ||||||||||||||||| || ||||| || |||    
T  30676082 gcgaaacatgatgttctttggtttgagagaggatgatcctctaagttgaccagacttgattgaatactcatcaaggatatcatcgagcacataaacagca 30675983  T
Q  279 tctttgag 286  Q
    ||||||||    
T  30675982 tctttgag 30675975  T

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Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 30241351 - 30241293
Alignment:
Q  3 tcttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagc 61  Q
    ||||||||||||||||| |||||||||| |||||  | ||||||||| |||||||||||    
T  30241351 tcttctcgtccaaacacttttggttcagtaataatagcgctggtttgacgccattcagc 30241293  T

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Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 30676257 - 30676195
Alignment:
Q  4 cttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccactt 66  Q
    |||||||||||||||| |||| |||||||||||  |||| ||||||||||| |||||| ||||    
T  30676257 cttctcgtccaaacacttttgattcagcaataattgagccggtttggcgcccttcagctactt 30676195  T

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Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 30241120 - 30241047
Alignment:
Q  246 tcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccatatttgaatagagcggtctgt 319  Q
    ||||||||||||||||| || ||||| ||  ||||||||||||| ||||||||||  | |||||||| ||||||    
T  30241120 tcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgt 30241047  T

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Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 30207656 - 30207723
Alignment:
Q  1 catcttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccacttca 68  Q
    |||||||||| ||||| || ||||||||||||||||  ||||| ||||| |||||||| || ||||||    
T  30207656 catcttctcgcccaaatacttttggttcagcaataatagagctagtttgacgccattctgctacttca 30207723  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 17417463 - 17417341
Alignment:
Q  178 ggcgaaacatgacattctttggtttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgc 277  Q
    ||||||| ||||  ||||||||||||||| ||||| ||||  |||| ||| | || | ||| || || |||||||| |||||||| || ||||| ||  |    
T  17417463 ggcgaaatatgatgttctttggtttgaaataggatgagcctctaagccgaccagactcgattgagcactcatcaagaatatcatctagcacataaacaac 17417364  T
Q  278 atctttgagttgctgcagccata 300  Q
    |||||||||||| || |||||||    
T  17417363 atctttgagttgttgaagccata 17417341  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 30061679 - 30061715
Alignment:
Q  174 tcatggcgaaacatgacattctttggtttgaaagagg 210  Q
    ||||||||||||||||  |||||||||||||||||||    
T  30061679 tcatggcgaaacatgatgttctttggtttgaaagagg 30061715  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 30484708 - 30484744
Alignment:
Q  174 tcatggcgaaacatgacattctttggtttgaaagagg 210  Q
    ||||||||||||||||  |||||||||||||||||||    
T  30484708 tcatggcgaaacatgatgttctttggtttgaaagagg 30484744  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 30750953 - 30750989
Alignment:
Q  174 tcatggcgaaacatgacattctttggtttgaaagagg 210  Q
    ||||||||||||||||  |||||||||||||||||||    
T  30750953 tcatggcgaaacatgatgttctttggtttgaaagagg 30750989  T

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Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 174 - 319
Target Start/End: Original strand, 52353268 - 52353413
Alignment:
Q  174 tcatggcgaaacatgacattctttggtttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacataca 273  Q
    ||||| |||||||  | ||| ||||||||||| || ||||| ||| ||||||||   |||||||| ||||||||||||||||||||||| ||||| || |    
T  52353268 tcatgacgaaacacaatattttttggtttgaatgacgataaacccataagtcgactagatttgatcgaacattcatcaaggatatcatcgagaacgtaaa 52353367  T
Q  274 ctgcatctttgagttgctgcagccatatttgaatagagcggtctgt 319  Q
    | ||||||||||||||||| ||||||| || |||||||||||||||    
T  52353368 cagcatctttgagttgctgaagccatactttaatagagcggtctgt 52353413  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 252
Target Start/End: Original strand, 13617734 - 13617987
Alignment:
Q  2 atcttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccacttcagttggt--tgttgcgtaacagtaacaccttctc 99  Q
    ||||| ||||||||||||||||| ||||||||||  |||| | ||||||| ||||||| |||||||| |||||  | ||   ||||||||| ||||||||    
T  13617734 atcttatcgtccaaacacctttgattcagcaatagtggagatcgtttggcaccattcaaccacttcaattggtaattttctctaacagtaataccttctc 13617833  T
Q  100 gtagcgtaaaa-ttcttcttaccttctgcaatatgactgagtctgctagtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttg 198  Q
     |||    ||| || ||||||| ||  ||||| |||   | | |||| | ||| |  ||||||||||| ||||||||||||  | || |||  | ||||     
T  13617834 atagaaagaaacttgttcttacttttagcaatttgatcaattttgcttgcaatctttttcaacctacttcctatgtcatggaaatacttgatgtccttta 13617933  T
Q  199 gtttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaa 252  Q
    ||||||||| ||| |||||||||||||||| |||||||||||||||||||||||    
T  13617934 gtttgaaagtggacaagcccttaagtcgagtggatttgatggaacattcatcaa 13617987  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 13617991 - 13618052
Alignment:
Q  268 catacactgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttc 329  Q
    |||||| |||||||| |||||| || |||||||||| |||||||| | || |||||||||||    
T  13617991 catacattgcatcttcgagttgttggagccatattttaatagagcagactcttaattgcttc 13618052  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 25292919 - 25292601
Alignment:
Q  1 catcttctcgtccaaacacctttggttcagcaataaaggagctggtttggcgccattcagccacttcagttggttgttgcgtaacagtaacaccttctcg 100  Q
    |||||||||||||||| || |||||||| |||||||  || || ||||||||| ||||||| ||||||||||    || | |||||||  |||| | |||    
T  25292919 catcttctcgtccaaatacttttggttcggcaataatagaactagtttggcgctattcagctacttcagttgagctttccctaacagttccaccctgtcg 25292820  T
Q  101 tagcgtaaaattcttcttaccttctgcaatatgactgagtctgctagtaatttcattcaacctactgcctatgtcatggcgaaacatgacattctttggt 200  Q
     ||   ||| || ||||||  | | ||||||| |   | ||| || ||||| || |||||| |  |||| |||| |||| |||||||||  |||||||||    
T  25292819 aagaagaaacttgttcttagttgcagcaatatcatccaatctccttgtaatctctttcaacttgttgccaatgtaatggtgaaacatgatgttctttggt 25292720  T
Q  201 ttgaaagaggataagcccttaagtcgagcggatttgatggaacattcatcaaggatatcatcaagaacatacactgcatctttgagttgctgcagccata 300  Q
    |||||||||||| ||||  ||||||||   ||||||||  | || ||||||||||||||||| || ||||| ||  ||||||||||||| || |||||||    
T  25292719 ttgaaagaggatgagcctctaagtcgactagatttgatcaatcactcatcaaggatatcatcgagcacatatacaacatctttgagttgttgtagccata 25292620  T
Q  301 tttgaatagagcggtctgt 319  Q
      | ||||||||| |||||    
T  25292619 ccttaatagagcgatctgt 25292601  T

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