View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11176_low_11 (Length: 337)
Name: NF11176_low_11
Description: NF11176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11176_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 46674049 - 46673723
Alignment:
| Q |
1 |
atgttcttgttttacagtattactctaatattgtttcagaaaatctagaaaccatgttcaacaaccttttgaaacctccaaccaccatattccatgatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46674049 |
atgttcttgttttacagtattactctaataatgtttcagaaaatctagaaaccatgttcaacaaccttttgaaacctccaaccaccatattccacgatac |
46673950 |
T |
|
| Q |
101 |
cacatctgtgataagtcatcagagtcaattcgagaacccatggaagagaaaattacaacctttcaagagaaatgagattccagatgcaaccataaaaata |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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|
| T |
46673949 |
cacatctgtgataagtcatcagagccaattcgagaacccatggaagagaaaattacaacctttcaagagaaatgggattccagatgcaactataaaaata |
46673850 |
T |
|
| Q |
201 |
ttaaaactaattattgatttgacctaatgtttgaatggatttgcgacaacatccaatgcatcctggtttagatagaagcaatctctagtctctacaatat |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46673849 |
ttaaaactaattattgatttgatctaatgtttgaatggatttgcgacaacatccaatgcatcctggtttagatagaagcaatctctagtctctacaatat |
46673750 |
T |
|
| Q |
301 |
ttggttcaagtaattaagcattctgtg |
327 |
Q |
| |
|
|||||||||||||||||||||| |||| |
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|
| T |
46673749 |
ttggttcaagtaattaagcattgtgtg |
46673723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 8721178 - 8720852
Alignment:
| Q |
1 |
atgttcttgttttacagtattactctaatattgtttcagaaaatctagaaaccatgttcaacaaccttttgaaacctccaaccaccatattccatgatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
8721178 |
atgttcttgttttacagtattactctaatattgtttcagaaaatctagaaaccatgttcaacaaccttttgaaacctccaaccaccatattccacgatac |
8721079 |
T |
|
| Q |
101 |
cacatctgtgataagtcatcagagtcaattcgagaacccatggaagagaaaattacaacctttcaagagaaatgagattccagatgcaaccataaaaata |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||| |||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||| |
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|
| T |
8721078 |
cacatctgtgataagtcatcagagccaattcgagaacctatggtagagaaaattgctaccttacaagagaaatgggattccagatgcaaccataaaaata |
8720979 |
T |
|
| Q |
201 |
ttaaaactaattattgatttgacctaatgtttgaatggatttgcgacaacatccaatgcatcctggtttagatagaagcaatctctagtctctacaatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
8720978 |
ttaaaactaattattgatttgacctaatgtttgaatggatttgcgacaacatccaatgcatcctggtttagatagaagcaatctctagtctctacagtat |
8720879 |
T |
|
| Q |
301 |
ttggttcaagtaattaagcattctgtg |
327 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
8720878 |
ttggttcaagtaattaagcattgtgtg |
8720852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 44427790 - 44428114
Alignment:
| Q |
1 |
atgttcttgttttacagtattactctaatattgtttcagaaaatctagaaaccatgttcaacaaccttttgaaacctccaaccaccatattccatgatac |
100 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44427790 |
atgttcttgttttacggtattactttaatattgtttcataaaatctagaaaccatgttcaacaaccttttgaaacctccaaccaccatattccacgatac |
44427889 |
T |
|
| Q |
101 |
cacatctgtgataagtcatcagagtcaattcgagaacccatggaagagaaaattacaacctttcaagagaaatgagattccagatgcaaccataaaaata |
200 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
44427890 |
cacatctgtgataagttatcagagccaattcgagaacccatggaagagaaaattgcaacctttcaagaaaaatgggattccagatgcaaccataaaaata |
44427989 |
T |
|
| Q |
201 |
ttaaaactaattattgatttgacctaatgtttgaatggatttgcgacaacatccaatgcatcctggtttagatagaagcaatctctagtctctacaatat |
300 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44427990 |
ttaaaactaattattgatttga--taatgtttgaatggatttgcgacaacatccaatgcatcctggtttagatagaagcaatctctagtctctacaatat |
44428087 |
T |
|
| Q |
301 |
ttggttcaagtaattaagcattctgtg |
327 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
44428088 |
ttggttcaagtaattaagcattgtgtg |
44428114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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