View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11176_low_15 (Length: 221)
Name: NF11176_low_15
Description: NF11176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11176_low_15 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34441835 - 34441612
Alignment:
| Q |
1 |
agattacaaaagtttagataaaatctacggtttgttacagtaaacatattggattaggatttacaatttgaatttgaa------aatagattacaataac |
94 |
Q |
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| T |
34441835 |
agattacaaaagtttagataaaatctacggtttgttacagtaaacatattggattaggatttacaatttgaatttgaatttgaaaatagattacaataac |
34441736 |
T |
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| Q |
95 |
aaactatgagaatattactccaacaaactcaacccttatattctgatctgcttatttatatctcaagggtatcatcattattaaaagatatcaagtaccg |
194 |
Q |
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| T |
34441735 |
aaactatgagaatattactccaaaaaactcaacccttatattct---ctgcttatttatatctcaagggtatcatcattattaaaagatatcaagtactg |
34441639 |
T |
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| Q |
195 |
ttaatgaaattggagggattatgacat |
221 |
Q |
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| T |
34441638 |
ttaatgaaattggagggattatgacat |
34441612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 34451613 - 34451538
Alignment:
| Q |
58 |
gatttacaatttgaatttgaaaatagattacaataacaaactatgagaatattactccaacaaactcaacccttat |
133 |
Q |
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| T |
34451613 |
gatttacaatttgaatttgaaaacagagtaaggtaacaaactatgagaatattactccaacagattcaacccttat |
34451538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 334513 - 334628
Alignment:
| Q |
5 |
tacaaaagtttagataaaatctacggtttgttacagtaaacatattggattaggatttacaatttgaatttgaaaatagattacaataacaaac-tatga |
103 |
Q |
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| T |
334513 |
tacaaaggttgagagaatatctagagtttgttacaacaaacatcttagattaggatttacaatttgaatttagaaatagaatacaacatccagcttatga |
334612 |
T |
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| Q |
104 |
gaatattactccaaca |
119 |
Q |
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| T |
334613 |
gaatactactccaaca |
334628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 17881572 - 17881674
Alignment:
| Q |
24 |
tctacggtttgttacagtaaacatattggattaggatttacaatttgaatttgaaaa-------tagattacaataacaaactatgagaatattactcca |
116 |
Q |
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| T |
17881572 |
tctacagtttgttacacgaaacacattggattagg-tttacaatttgaatttaaaaattaaaaatagattacaataacaaactatgaggatattagttca |
17881670 |
T |
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| Q |
117 |
acaa |
120 |
Q |
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|||| |
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| T |
17881671 |
acaa |
17881674 |
T |
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