View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11176_low_3 (Length: 758)
Name: NF11176_low_3
Description: NF11176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11176_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 168 - 686
Target Start/End: Original strand, 2443331 - 2443860
Alignment:
| Q |
168 |
ccaggacagctcacatccgaaccccaaagacaagacagcaaccaaccttaaaaagaagttgacgcatgtattttcaatctactcaaactctaatgcaaag |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2443331 |
ccaggacagctcacatccgaaccccaaagacaagacagcaaccaaccttaaaaagcagttgacgcatgtattttcaatctactcaaactctaatgcaaag |
2443430 |
T |
|
| Q |
268 |
ataacacttttattccatcaattacttcattgatctccctcacttggttgcatcaaatcctttcgttcctcaccctgcaaatcaccaaaagcttggaatg |
367 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2443431 |
ataacacttttatcccatcaattacttcatcaatctccctcacttggttgcatcaaatcctttcgttcctcaccctgcaaatcaccaaaagcttggaatg |
2443530 |
T |
|
| Q |
368 |
ccaaatcaaccatgcacctttcaaattttcttttcattaacctcaaccgaccaacaagaaaagtgcacaaataaattcagggagtaacaaaactaaaatc |
467 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
2443531 |
ccaaatcaaccacgcacctttcagattttcttctcattaacctcaaccgaccaacaagaaaagtgcacaaataaattcggggagtaacaaaattaaaatc |
2443630 |
T |
|
| Q |
468 |
catccatctcaaaacgttttgacacaccatatcttccattttgccacacaacagacagtttaagaatgcgttgtgatccaaaacgtttccaaatgcaaga |
567 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2443631 |
catccatctcaaaacgttttgaaacaccatatcttccattttgccacacaacagacaatttaagaatgcgttgtgatccaaaacgtttccaaatgcaaga |
2443730 |
T |
|
| Q |
568 |
tttgaacacgttggaatatagtcttgaagaagagtccaagaaaaaaccaca-----------agccgggctcctccagattgactcaaacacccacttct |
656 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
2443731 |
tttgaacacgttggaatacagtctagaagaagagtccaagaaaaaaccacaacttttgaccgagccgggctcctccaaattgactcaaacatccacttct |
2443830 |
T |
|
| Q |
657 |
ccaagttattcaacctatcatcatctataa |
686 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2443831 |
ccaagttattcaacctatcatcatctataa |
2443860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 539 - 678
Target Start/End: Original strand, 12220501 - 12220651
Alignment:
| Q |
539 |
tgtgatccaaaacgtttccaaatgcaagatttgaacacgttggaatatagtcttgaagaagagtccaagaaaaaaccaca-----------agccgggct |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | |||||||| || ||| |||||||||||||||||||| | ||| |||||| || |
|
|
| T |
12220501 |
tgtgatccaaaacgtttccaaatgcaagatttaaccgagttggaatttaatctagaagaagagtccaagaaaaagctacaacttttgaccgagccggact |
12220600 |
T |
|
| Q |
628 |
cctccagattgactcaaacacccacttctccaagttattcaacctatcatc |
678 |
Q |
| |
|
| |||| ||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
12220601 |
cttccaaattgactcaaaaacccacttctccaagttattcaatctatcatc |
12220651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 619 - 678
Target Start/End: Complemental strand, 7425078 - 7425019
Alignment:
| Q |
619 |
agccgggctcctccagattgactcaaacacccacttctccaagttattcaacctatcatc |
678 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7425078 |
agccgggctcttccaaattgactcaaacacccacttctccaagttattcaatctatcatc |
7425019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University