View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11176_low_7 (Length: 362)
Name: NF11176_low_7
Description: NF11176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11176_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 4686597 - 4686705
Alignment:
| Q |
230 |
gggaattcaagaaattttacagtgtattggcaaattgaatatcagcttcaagagctttaagagaatccttgaaagacttgcgcatctctcccatcaccat |
329 |
Q |
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| T |
4686597 |
gggaattcaagaaattttacagtgtattggcaaattgaatatcagcttcaagagctttaagagaatccttgaaagacttgcgcatctctcccatcaccat |
4686696 |
T |
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| Q |
330 |
aatcacttt |
338 |
Q |
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| T |
4686697 |
aatcacttt |
4686705 |
T |
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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 4686414 - 4686490
Alignment:
| Q |
43 |
ttttttcctctgaaaacataacactaccttgaatatgaacaaacagaacacagattactccatatttcagcaatcat |
119 |
Q |
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| T |
4686414 |
ttttttcttctgaaaccatgacactaccttgaatatgaacaaacagaacacagattactccatatttcagcaatcat |
4686490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 246 - 314
Target Start/End: Original strand, 24968425 - 24968493
Alignment:
| Q |
246 |
ttacagtgtattggcaaattgaatatcagcttcaagagctttaagagaatccttgaaagacttgcgcat |
314 |
Q |
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| T |
24968425 |
ttacagtgtattagcaaattgaatatcagcttcaagagctttgagagaatccttgaaagactttcgcat |
24968493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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