View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11176_low_8 (Length: 360)
Name: NF11176_low_8
Description: NF11176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11176_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 10820479 - 10820812
Alignment:
| Q |
19 |
atataagcatatgctcatgaacatttttaacataagcctcaagacaaacacaatcttcctttgaaaaatgtcacatattctcaatgatattgcatcccaa |
118 |
Q |
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| T |
10820479 |
atataagcatatgctcatgaacattttaaacataagcctcaagacaaacacaatcttcctttgaaaaatgtcacatattctcaatgatattgcatcccaa |
10820578 |
T |
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| Q |
119 |
gaatatgaaaaatttgaagtaaagttcattaagaaaagtgttgtaaaagctctcaatcattttccaaagccattttcagtgattaatctctcaaatcttg |
218 |
Q |
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| T |
10820579 |
gaatatgaaaaatttgaagtaaagttcattaagaaaagtgttgtaaaagctctcaatcattttccaaagccattttcagtgattaatctctcaaatcttg |
10820678 |
T |
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| Q |
219 |
atctactttctggtcgttttccagttacatacttgtatttctacaaaaaaccaaaactaggtaacttcaaatcttttgttaacaatcttaaaacttctct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10820679 |
atctactttctggtcgttttccagttacatacttgtatttctacaaaaaaccaaaactaggtaacttcaaatcttttgttaacaatcttaaaacttctct |
10820778 |
T |
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| Q |
319 |
agcacaaatacttaatcattactatccctttgct |
352 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
10820779 |
agcacaaatacttaatcattactatccctttgct |
10820812 |
T |
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