View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11176_low_9 (Length: 344)
Name: NF11176_low_9
Description: NF11176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11176_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 31371968 - 31372286
Alignment:
| Q |
9 |
agcaaaggtccaacaaaacattgaactctatcaaagaaactcatgggataaggtgttagaatttttgaagttggatatcaatgattccatggaagttaat |
108 |
Q |
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| T |
31371968 |
agcaaaggtccaacaaaacattgaactctatcaaagaaactcatgggataaggtgttagaatttttgaagttggatatcaatgattccatggaagttaat |
31372067 |
T |
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| Q |
109 |
tttgtagtagatttgattaaagaaaagattagtttgtttaacaagcactttacagagacatgcagagttcagtgcacatggtccattcattattataagc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31372068 |
tttgtagtagatttgattaaagaaaagattagtttgtttaacaagcactttacagagacatgcagagttcagtgcacatggtccattcattattataagc |
31372167 |
T |
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| Q |
209 |
taaggaaagaaatgattgaatctctcaagaataccttgctcccagcgtatggaatcttcattgggaggtttcaggattttcttaaaactgatgcttatga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31372168 |
taaggaaagaaatgattgaatctctcaagaataccttgctcccagcgtatggaatcttcattgggaggtttcaggattttcttaaaactgatgcttatga |
31372267 |
T |
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| Q |
309 |
gtatattgagtatggaatg |
327 |
Q |
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||||||||||||||||||| |
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| T |
31372268 |
gtatattgagtatggaatg |
31372286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 31324537 - 31324855
Alignment:
| Q |
9 |
agcaaaggtccaacaaaacattgaactctatcaaagaaactcatgggataaggtgttagaatttttgaagttggatatcaatgattccatggaagttaat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31324537 |
agcaaaggtccaacaaaacattgaactctatcaaagaaactcatgggataaggtgttagaatttttgaagttggatatcaatgattccatggaagttaat |
31324636 |
T |
|
| Q |
109 |
tttgtagtagatttgattaaagaaaagattagtttgtttaacaagcactttacagagacatgcagagttcagtgcacatggtccattcattattataagc |
208 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31324637 |
tttgtagtagatttgatgaaagaaaagattagtttgtttaacaagcactttacagagacatgcagagttcagtgcacatggtccattcattattataagc |
31324736 |
T |
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| Q |
209 |
taaggaaagaaatgattgaatctctcaagaataccttgctcccagcgtatggaatcttcattgggaggtttcaggattttcttaaaactgatgcttatga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31324737 |
taaggaaagaaatgattgaatctctcaagaataccttgctcccagcgtatggaatcttcattgggaggtttcaggattttcttaaaactgatgcttatga |
31324836 |
T |
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| Q |
309 |
gtatattgagtatggaatg |
327 |
Q |
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||||||||||||||||||| |
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| T |
31324837 |
gtatattgagtatggaatg |
31324855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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