View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11177_high_1 (Length: 668)
Name: NF11177_high_1
Description: NF11177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11177_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 23 - 450
Target Start/End: Complemental strand, 39675852 - 39675407
Alignment:
| Q |
23 |
cggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctgctgctttt |
122 |
Q |
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| T |
39675852 |
cggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctgctgctttt |
39675753 |
T |
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| Q |
123 |
ggttcttctttgttttgctggagggatcagaatatatttggcgttgaacttccatttctctcttgttaagtgaaggatttgaaatccagaaaatgaaaag |
222 |
Q |
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| T |
39675752 |
ggttcttctttgttttgctggagggatcagaatatatttggcgttgaacttccatttctctcttgttaagtgaaggatttgaaatccagaaaatgaaaag |
39675653 |
T |
|
| Q |
223 |
aaagaaaggagttcagggagattgattggtaatttgtttgaaacttgaaaaagaaagccaagatttagaatgttatttatagacagacaaagaataagag |
322 |
Q |
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| T |
39675652 |
aaagaaaggagttcagggagattgattggtaattggtttgaaacttgaaaaagaaagccaagatttagaatgttatttatagacagacaaagaataagag |
39675553 |
T |
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| Q |
323 |
ag----------------tgaggaagtttcatagttacatcgtaattaactcgtgcacaacgagggaatattgtagtaatgtcaagataatatattttgt |
406 |
Q |
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| T |
39675552 |
agtgagtgagagtgagagtgaggaagtttcatagttagatcgtaattaactcgtgaacaacgagggaatattgtagtaatgtcaagataatatattttgt |
39675453 |
T |
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| Q |
407 |
ggagatgctaacat--cacatcatcacaagaagcctttacttgact |
450 |
Q |
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| T |
39675452 |
ggagatgctaacatcacacatcatcacaagaagcctttacttgact |
39675407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 473 - 564
Target Start/End: Complemental strand, 39675353 - 39675263
Alignment:
| Q |
473 |
tgtgcacagactaattaagttttaaaaaactagtgttattnnnnnnnncaaatttgaaagaaacaaagttttaaataattcgttgaacgtaa |
564 |
Q |
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| T |
39675353 |
tgtgcacagactaattaagttttaaaaaactagtgttat-aaaaaaaacaaatttgaaagaaacaaagttttaaataattcattgaacgtaa |
39675263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 10888097 - 10888167
Alignment:
| Q |
25 |
gttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaag |
95 |
Q |
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| T |
10888097 |
gttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtttgttaaatacagtgaagaag |
10888167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 10045840 - 10045775
Alignment:
| Q |
28 |
aagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaaga |
93 |
Q |
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| T |
10045840 |
aagaagaaaatacgcgacggagaagaaaagaccgaagaaaattgcgtttgttaagtagagtgaaga |
10045775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 451
Target Start/End: Complemental strand, 10865823 - 10865768
Alignment:
| Q |
398 |
atattttgtggaga--tgctaacatcacatcatcacaagaagcctttacttgacta |
451 |
Q |
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| T |
10865823 |
atattttgtggagagatgctaacattacatcatcactagaagcctttatttgacta |
10865768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 10866273 - 10866218
Alignment:
| Q |
29 |
agaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagta |
84 |
Q |
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| T |
10866273 |
agaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta |
10866218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 10874032 - 10874087
Alignment:
| Q |
29 |
agaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagta |
84 |
Q |
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||||||||||| |||||||||||||||||||| ||||||| | ||||||||||| |
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| T |
10874032 |
agaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta |
10874087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 10879103 - 10879158
Alignment:
| Q |
29 |
agaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagta |
84 |
Q |
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||||||||||| |||||||||||||||||||| ||||||| | ||||||||||| |
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| T |
10879103 |
agaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta |
10879158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 10884174 - 10884229
Alignment:
| Q |
29 |
agaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagta |
84 |
Q |
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||||||||||| |||||||||||||||||||| ||||||| | ||||||||||| |
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| T |
10884174 |
agaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta |
10884229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 614
Target Start/End: Complemental strand, 39675245 - 39675213
Alignment:
| Q |
582 |
caaacttagcgactaacgttttaaatgatggag |
614 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
39675245 |
caaaattagcgactaacgttttaaatgatggag |
39675213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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