View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11177_high_4 (Length: 249)
Name: NF11177_high_4
Description: NF11177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11177_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 24312486 - 24312244
Alignment:
| Q |
1 |
ttccctaatttttgtcaaactcaatttttattgaacttttaatggtattcatcatttttagtgtgaatgagataatctacaaacattgacagtaagagtt |
100 |
Q |
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| T |
24312486 |
ttccctaatttttgtcaaactcaatttttattgaacttttaatggtattcatcatttttagtgtgaatgagataatctacaaacattgacagtaagagtt |
24312387 |
T |
|
| Q |
101 |
ttgcgttatttgttctattttagaatagt------gttagctcacccttgctcttttggaatcattcactggtaaaacaggactcaaatcagctataagg |
194 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24312386 |
ttgcgttatttgttctattttagaatagtgttactgttagctcacccttgctcttttggaatcattcactggtaaaacaggactcaaatcagctataagg |
24312287 |
T |
|
| Q |
195 |
actgtttaagtccacataatgccttgtatagctcactacctct |
237 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24312286 |
actgtttaagtccacataatgccttgtgtagctcactacctct |
24312244 |
T |
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