View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11177_low_2 (Length: 565)
Name: NF11177_low_2
Description: NF11177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11177_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 19 - 555
Target Start/End: Complemental strand, 52574335 - 52573799
Alignment:
| Q |
19 |
aaagagaggtttctggagtaccatatgtcgtcacatagaaattgcagtggttctcaaggaagtttcactgaaggcagccacaaattacttgtttagcatt |
118 |
Q |
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| T |
52574335 |
aaagagaggtttcaggagtaccatatgtcgtcacatagaaattgcagtggttctcaaggaagtttcactgaagtcagccacaaattacttgtttagcatt |
52574236 |
T |
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| Q |
119 |
aagttgtaaatactgattctaaagaaagagggagaatggttcggtgagaaatgaatgacttgtatacctcacttcctttgttctttgtatgatatgggta |
218 |
Q |
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| T |
52574235 |
aagttgtaaatactgattccaaagaaagagggagaatggttcggtgagaaatgaatgacttgtatacctcacttcctttgttctttgtatgatatgggta |
52574136 |
T |
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| Q |
219 |
gggctgaaaaaacgagtcgagtttgttagaatcnnnnnnncaacttaaactcgatttaatataagctcacgtacaacttcattcattgggatatcttttt |
318 |
Q |
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| T |
52574135 |
gggctgaaaaaacgagtcgagttcgttagaatctttttttcaacttaaactcgatttaatttaagctcacgtacaacttcattcattgggatatcttttt |
52574036 |
T |
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| Q |
319 |
caacatgatttagcacaatagctcagatctaatgaacaaaagggaaaaataaggaatattttgaaatcaaaatgtatgcctnnnnnnngcctaacaccat |
418 |
Q |
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| T |
52574035 |
caacttgatttagcacgatagctcagatctaatgaacaaaagggcaaaacaaggaatattttgaaatcaaaatgtatgcctaaaaaaagcctaacaccat |
52573936 |
T |
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| Q |
419 |
atcaattgaagcactggctgagaacaaatttggtctgaagaccacgtaacaggcaaatgagttgtatattttagcttctcttttttagccactcttgctc |
518 |
Q |
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| T |
52573935 |
atcaattgaagcactggctgagaacaaatttggtctgaagaccacgtaacaggcaaatgagttgtatattttagcttctcttttttagccactcttgctc |
52573836 |
T |
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| Q |
519 |
tcaatcttctaaaacctatcgatgtggactattctca |
555 |
Q |
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| T |
52573835 |
tcaatcttctaaaacctatcgatgtggactattctca |
52573799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 52576316 - 52576231
Alignment:
| Q |
115 |
cattaagttgtaaatactgattctaaagaaagagggagaatggttcggtgagaaatgaatgacttgtatacctcacttcctttgttct |
202 |
Q |
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| T |
52576316 |
cattaaattgtaaat--tgattccaaagaaaaaggaagagtggttcggttagaaatgaatgagttgtatatcccacttcctttgttct |
52576231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 52576423 - 52576352
Alignment:
| Q |
19 |
aaagagaggtttctggagtaccatatgtcgtcacatagaaattgcagtggttctcaaggaagtttcactgaaggca |
94 |
Q |
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| T |
52576423 |
aaagagaggtttctggagcgccatatgtc---acatagaa-ttgcagtggttctcaaggaaattttacggaaggca |
52576352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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