View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11177_low_3 (Length: 445)

Name: NF11177_low_3
Description: NF11177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11177_low_3
NF11177_low_3
[»] chr3 (3 HSPs)
chr3 (59-430)||(7129115-7129488)
chr3 (65-370)||(6821046-6821345)
chr3 (12-41)||(7129075-7129104)
[»] chr1 (4 HSPs)
chr1 (124-282)||(41958480-41958633)
chr1 (215-309)||(37492947-37493045)
chr1 (215-282)||(38037562-38037629)
chr1 (215-280)||(29552600-29552665)
[»] chr5 (5 HSPs)
chr5 (60-299)||(26133621-26133861)
chr5 (219-280)||(36268343-36268404)
chr5 (215-280)||(17174048-17174113)
chr5 (235-282)||(26689180-26689228)
chr5 (235-282)||(26958911-26958959)
[»] chr8 (1 HSPs)
chr8 (215-274)||(942143-942202)
[»] chr4 (4 HSPs)
chr4 (215-282)||(21050182-21050249)
chr4 (233-282)||(12567686-12567735)
chr4 (218-282)||(1073330-1073394)
chr4 (106-206)||(21781986-21782086)
[»] chr6 (1 HSPs)
chr6 (226-282)||(12343331-12343387)
[»] chr2 (1 HSPs)
chr2 (215-280)||(36596637-36596702)


Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 59 - 430
Target Start/End: Original strand, 7129115 - 7129488
Alignment:
Q  59 cccaagagaaactgatatattaagaaaccaaatcaagttacctcagtaaaaggtgttctgaagaaagcttgacaagaaacaaagtaatacacaatatctg 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7129115 cccaagagaaactgatatattaagaaaccaaatcaagttacctcagtaaaaggtgttctgaagaaagcttgacaagaaacaaagtaatacacaatatctg 7129214  T
Q  159 aaatatatgaaaggcaagctaaacaagctacataattgtagttaaacataacatatataggattaagcctccagaattggtaatcaaagtcgaataaaac 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7129215 aaatatatgaaaggcaagctaaacaagctacataattgtagttaaacaaaacatatataggattaagcctccagaattggtaatcaaagtcgaataaaac 7129314  T
Q  259 atatttcgacttaaaccaccaatacgacgaagttttaccc--tcacaaagagccatgatgtaatatgttctccatcctctagaaaatatgtctgttacgt 356  Q
    |||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  7129315 atatttcgacttaaaccaccaatacgacaaagttttaccctttcacaaagagccatgatgtaatatgtcctccttcctctagaaaatatgtctgttacgt 7129414  T
Q  357 tcctttcaaataatctcagtgacacaaagccaagtaacatttaatttagagagttttgaacctcatgtgagaaa 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7129415 tcctttcaaataatctcagtgacacaaagccaagtaacatttaatttagagagttttgaacctcatgtgagaaa 7129488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 65 - 370
Target Start/End: Complemental strand, 6821345 - 6821046
Alignment:
Q  65 agaaactgatatattaagaaaccaaatcaagttacctcagtaaaaggtgttctgaagaaagcttgacaagaaacaaagtaatacacaatatctgaaatat 164  Q
    |||||||||||||||||||||  |||||| ||   ||||| | |||||||   ||||| || ||||| |||||||||||| |||| | |||| |||| ||    
T  6821345 agaaactgatatattaagaaaataaatcatgtcgtctcagcacaaggtgtatcgaagagagtttgaccagaaacaaagtattacaaagtatcagaaaaat 6821246  T
Q  165 atgaaaggcaagctaaacaagctacataattgtagttaaacataacatatataggattaagcctccagaattggtaatcaaagtcgaataaaacatattt 264  Q
    ||||    ||||| ||  |||| | ||||||||||||||||| |    | |||||||| ||||||||  ||||  | |||||||||||||||||||||||    
T  6821245 atgatgaacaagcaaagaaagcca-ataattgtagttaaacaga----aaataggatttagcctccatgattgacagtcaaagtcgaataaaacatattt 6821151  T
Q  265 cgacttaaaccaccaatacgac-gaagttttacc--ctcacaaagagccatgatgtaatatgttctccatcctctagaaaatatgtctgttacgttcctt 361  Q
    | |||| ||||||||||||||| ||||||| |||   |||||||||||    ||||||  ||| |||| ||||||| ||||||||| ||||| |||||||    
T  6821150 caacttgaaccaccaatacgactgaagtttcaccttttcacaaagagc----atgtaagttgtcctccttcctctaaaaaatatgtttgttatgttcctt 6821055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 7129075 - 7129104
Alignment:
Q  12 atgaataaaccaatattatttattttttat 41  Q
    ||||||||||||||||||||||||||||||    
T  7129075 atgaataaaccaatattatttattttttat 7129104  T

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Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 124 - 282
Target Start/End: Complemental strand, 41958633 - 41958480
Alignment:
Q  124 agcttgacaagaaacaaagtaatacacaatatctgaaatatatgaaaggcaagctaaacaagctacataattgtagttaaacataacatatataggatta 223  Q
    ||||| ||||||||||||||||||||| |||||||||| |||| || ||||||| ||||||| ||||||| |||||||||||||| |||||     ||||    
T  41958633 agcttaacaagaaacaaagtaatacacgatatctgaaagatataaagggcaagcaaaacaaggtacataactgtagttaaacatatcatat----tatta 41958538  T
Q  224 agcctccagaattggtaatcaaagtcgaataaaacatatttcgacttaaaccaccaata 282  Q
    |||||||| ||||| || | ||||| ||||||||||| |||  ||||||||||||||||    
T  41958537 agcctccataattgatagtgaaagtggaataaaacat-tttttacttaaaccaccaata 41958480  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 215 - 309
Target Start/End: Original strand, 37492947 - 37493045
Alignment:
Q  215 ataggattaagcctccagaattggtaatcaaag-tcgaataaaacatatttcgacttaaaccaccaatacgac-gaagttttaccc--tcacaaagagc 309  Q
    |||||||| |||||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||  |||||||||||    
T  37492947 ataggatttagcctccataattgatagtcaaagatcgaataaaacatatttcgacttaaaccaccaatatgactgaagttttaccctttcacaaagagc 37493045  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 38037629 - 38037562
Alignment:
Q  215 ataggattaagcctccagaattggtaatcaaagtcgaataaaacatatttcgacttaaaccaccaata 282  Q
    |||||||| | |||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  38037629 ataggatttaacctccataattggtaatcaaaatcgaacaaaacatatttcgacttaaaccatcaata 38037562  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 29552600 - 29552665
Alignment:
Q  215 ataggattaagcctccagaattggtaatcaaagtcgaataaaacatatttcgacttaaaccaccaa 280  Q
    ||||||||||||||||| |||||||||||| | |||||   |||||||||||||||  ||||||||    
T  29552600 ataggattaagcctccaaaattggtaatcataatcgaaagcaacatatttcgactttgaccaccaa 29552665  T

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Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 60 - 299
Target Start/End: Complemental strand, 26133861 - 26133621
Alignment:
Q  60 ccaagagaaactgatatattaagaaaccaaatcaagttacctcagtaaaaggtgttctgaagaaagcttgacaa-gaaacaaagtaatacacaatatctg 158  Q
    |||| ||||| ||||||||||| |||| ||||||||  | ||  | | ||| ||| | ||| |||||||||||| || |||||||| |||||||||||||    
T  26133861 ccaaaagaaattgatatattaaaaaactaaatcaagcaatcttggaacaagttgtaccgaaaaaagcttgacaaagatacaaagtactacacaatatctg 26133762  T
Q  159 aaatatatgaaaggcaagctaaacaagctacataattgtagttaaacataacatat-ataggattaagcctccagaattggtaatcaaagtcgaataaaa 257  Q
    ||| | | |||  |||| | ||||||||||   || || ||||||   ||||| |  |||||||| |||||||| | ||| || ||||||||||||||||    
T  26133761 aaagaaaagaagagcaaacaaaacaagctaggcaactgcagttaat--taacagaagataggatttagcctccacagttgatagtcaaagtcgaataaaa 26133664  T
Q  258 catatttcgacttaaaccaccaatacgac-gaagttttaccct 299  Q
    ||||||||||||||||||||||||||||| |||| ||||||||    
T  26133663 catatttcgacttaaaccaccaatacgactgaagctttaccct 26133621  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 36268343 - 36268404
Alignment:
Q  219 gattaagcctccagaattggtaatcaaagtcgaataaaacatatttcgacttaaaccaccaa 280  Q
    |||||||||| || | |||||||||||||||||||||||||||||| |||||||||||||||    
T  36268343 gattaagccttcatagttggtaatcaaagtcgaataaaacatattttgacttaaaccaccaa 36268404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 17174113 - 17174048
Alignment:
Q  215 ataggattaagcctccagaattggtaatcaaagtcgaataaaacatatttcgacttaaaccaccaa 280  Q
    ||||||||||||||||| ||||| |||||| | |||||   || |||||||||||| |||||||||    
T  17174113 ataggattaagcctccaaaattgataatcataatcgaaagtaatatatttcgactttaaccaccaa 17174048  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 26689180 - 26689228
Alignment:
Q  235 ttggtaatcaaagtcgaataaaacatattt-cgacttaaaccaccaata 282  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||||||    
T  26689180 ttggtactcaaaatcaaataaaacatattttcgacttaaaccaccaata 26689228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 26958911 - 26958959
Alignment:
Q  235 ttggtaatcaaagtcgaataaaacatattt-cgacttaaaccaccaata 282  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||||||    
T  26958911 ttggtactcaaaatcaaataaaacatattttcgacttaaaccaccaata 26958959  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 942202 - 942143
Alignment:
Q  215 ataggattaagcctccagaattggtaatcaaagtcgaataaaacatatttcgacttaaac 274  Q
    ||||||| ||||| ||| |||||||||| ||||||||| |||||||||||||||||||||    
T  942202 ataggatcaagccaccataattggtaatgaaagtcgaacaaaacatatttcgacttaaac 942143  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 21050182 - 21050249
Alignment:
Q  215 ataggattaagcctccagaattggtaatcaaagtcgaataaaacatatttcgacttaaaccaccaata 282  Q
    ||||||||  ||||||| ||||| || ||||| |||| ||||||||||||||||||||||||||||||    
T  21050182 ataggattttgcctccataattgatattcaaaatcgagtaaaacatatttcgacttaaaccaccaata 21050249  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 12567686 - 12567735
Alignment:
Q  233 aattggtaatcaaagtcgaataaaacatatttcgacttaaaccaccaata 282  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  12567686 aattggtaatcaaaatcgaaaaaaacatatttcgatttaaaccaccaata 12567735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 1073394 - 1073330
Alignment:
Q  218 ggattaagcctccagaattggtaatcaaagtcgaataaaacatatttcgacttaaaccaccaata 282  Q
    ||||| |||||||| |||||||| ||||| | |||||||||||| || |||| ||||||||||||    
T  1073394 ggatttagcctccataattggtagtcaaaattgaataaaacatactttgactcaaaccaccaata 1073330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 206
Target Start/End: Original strand, 21781986 - 21782086
Alignment:
Q  106 aaaaggtgttctgaagaaagcttgacaagaaacaaagtaatacacaatatctgaaatatatgaaaggcaagctaaacaagctacataattgtagttaaac 205  Q
    |||||||||  |||||| |||||||| | |||||||||| ||||||||||  |||| |||||| |  ||||| ||  |||||| |||| |||||||||||    
T  21781986 aaaaggtgtattgaagagagcttgaccaaaaacaaagtactacacaatatgagaaaaatatgataaacaagcaaacgaagctaaataactgtagttaaac 21782085  T
Q  206 a 206  Q
    |    
T  21782086 a 21782086  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 12343331 - 12343387
Alignment:
Q  226 cctccagaattggtaatcaaagtcgaataaaacatatttcgacttaaaccaccaata 282  Q
    |||||| |||||||||||||||||||| ||||| |||||||  ||||| ||||||||    
T  12343331 cctccataattggtaatcaaagtcgaacaaaacttatttcgctttaaatcaccaata 12343387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 36596702 - 36596637
Alignment:
Q  215 ataggattaagcctccagaattggtaatcaaagtcgaataaaacatatttcgacttaaaccaccaa 280  Q
    ||||||||||| |||   |||||||||||||| ||||||  ||||||| ||| |||||||||||||    
T  36596702 ataggattaagtctcacaaattggtaatcaaattcgaatgtaacatatatcggcttaaaccaccaa 36596637  T

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