View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11177_low_5 (Length: 246)
Name: NF11177_low_5
Description: NF11177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11177_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 100 - 207
Target Start/End: Original strand, 46673539 - 46673646
Alignment:
| Q |
100 |
cacggttttatttcttctctttccttaaaccagaggaacaacagtagcactatcagtcacacaaactcctcttgttcatattaatcaatcttagatcaat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46673539 |
cacggttttatttcttctctttccttaaaccagaggaacaacagtagcactatcagtcacacaaactcctcttgttcatattaatcaatcttagattaat |
46673638 |
T |
|
| Q |
200 |
caacgcga |
207 |
Q |
| |
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||| |||| |
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| T |
46673639 |
caaagcga |
46673646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 46673457 - 46673495
Alignment:
| Q |
17 |
gtggcatttagaaacatcctatgaaaacatgacatgtca |
55 |
Q |
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| T |
46673457 |
gtggcatttagaaacatcctatgaaaacatgacatgtca |
46673495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 100 - 207
Target Start/End: Complemental strand, 44428299 - 44428191
Alignment:
| Q |
100 |
cacggttttatttcttctctttccttaaaccagaggaacaacagtagcactatcagtcacac-aaactcctcttgttcatattaatcaatcttagatcaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44428299 |
cacggttttatttcttctctttccttaaaccagaggaacaacagtagcactatcagtcacacaaaactcctcttgttcatattaatcaatcttagatcaa |
44428200 |
T |
|
| Q |
199 |
tcaacgcga |
207 |
Q |
| |
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|||| |||| |
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| T |
44428199 |
tcaaagcga |
44428191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 44428381 - 44428343
Alignment:
| Q |
17 |
gtggcatttagaaacatcctatgaaaacatgacatgtca |
55 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44428381 |
gtggcatttagaaacatcctatgaaaacatgacatgtca |
44428343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 8720716 - 8720775
Alignment:
| Q |
148 |
actatcagtcacacaaactcctcttgttcatattaatcaatcttagatcaatcaacgcga |
207 |
Q |
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| T |
8720716 |
actatcagtcacacaaactcctcttgttcatattaatcaatcttagatcaatcaaagcga |
8720775 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 8705094 - 8705146
Alignment:
| Q |
100 |
cacggttttatttcttctctttccttaaaccagaggaacaacagtagcactat |
152 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
8705094 |
cacggttttatttcttctctttccttaaaccagaggaacaacggtagcactat |
8705146 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 8704998 - 8705050
Alignment:
| Q |
3 |
aacgagcagaacctgtggcatttagaaacatcctatgaaaacatgacatgtca |
55 |
Q |
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||||| || ||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8704998 |
aacgaacataacatgtggcatttagaaacatcctatgaaaacatgacatgtca |
8705050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 8721275 - 8721237
Alignment:
| Q |
17 |
gtggcatttagaaacatcctatgaaaacatgacatgtca |
55 |
Q |
| |
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||||||||||||||||||| || |||||||||||||||| |
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|
| T |
8721275 |
gtggcatttagaaacatccaataaaaacatgacatgtca |
8721237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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