View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11177_low_7 (Length: 238)
Name: NF11177_low_7
Description: NF11177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11177_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 24312707 - 24312483
Alignment:
| Q |
15 |
aaaaaccacaagaaaattcaacttgaataaaaacgtttgtttgataacttgagatagtaaacaccttcgatgaccctttgatgcttgttttagggt-aca |
113 |
Q |
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| T |
24312707 |
aaaaaccacaagaaaattcaacttgaataaaaacgtttgtttgataacttgagatagtaaacaccttcgatgaccctttgatgcttgttttagagttaca |
24312608 |
T |
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| Q |
114 |
tttgaagccaatctcatcatactgatagtgctatgtgacaagtttttgttgattggttaatggttaatctctaaatttttatgtaatctgtctctaatgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24312607 |
tttgaagccaatctcatcatactgatagtgctatgtgacaagtttttgttgattggttaatggttaatctctaaatttttatgtaatctgtctctaatgt |
24312508 |
T |
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| Q |
214 |
aacggagactactcatcatttttcc |
238 |
Q |
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||||||||||||||||||||||||| |
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| T |
24312507 |
aacggagactactcatcatttttcc |
24312483 |
T |
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