View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11177_low_8 (Length: 220)
Name: NF11177_low_8
Description: NF11177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11177_low_8 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 45777068 - 45776849
Alignment:
| Q |
1 |
gcttttccaacctggataagatagatgggataagaagcatatatacgacatgcagcatacaatnnnnnnnggtgcaaatgaactcaccactctgccaaca |
100 |
Q |
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| T |
45777068 |
gcttttccaacctggataagatagatgggataagaagcatatatacgacatgcagcatacaataaaaaaaggtgcaaatgaactcaccactctgccaaca |
45776969 |
T |
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| Q |
101 |
aatttgaaataagatagatgttctgtttggtagacagagttcgggttcggctgaaatgttgactcattgcccacggtagtaaaaagcagcgctcctttgt |
200 |
Q |
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| T |
45776968 |
aatttgaaataagatagatgttctgtttggtagacagagttcgggttcggctgaaatgttgactcattgcccacggtagtaaaaagcagcgctcctttgt |
45776869 |
T |
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| Q |
201 |
caaaaataaccctggacaac |
220 |
Q |
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| T |
45776868 |
caaaaataaccctggacaac |
45776849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 82 - 220
Target Start/End: Original strand, 28159105 - 28159243
Alignment:
| Q |
82 |
actcaccactctgccaacaaatttgaaataagatagatgttctgtttggtagacagagttcgggttcggctgaaatgttgactcattgcccacggtagta |
181 |
Q |
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| T |
28159105 |
actcaccactctaccaataaacttgaaataagataaatgttctgtttgataaacagagttagggtttggttgaaatgttgactcgttgcccactgtagta |
28159204 |
T |
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| Q |
182 |
aaaagcagcgctcctttgtcaaaaataaccctggacaac |
220 |
Q |
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| T |
28159205 |
aaaagcagtgctcccttgtcaaaaataactctggacaac |
28159243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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