View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11178_high_2 (Length: 618)
Name: NF11178_high_2
Description: NF11178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11178_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 17 - 547
Target Start/End: Original strand, 33856979 - 33857515
Alignment:
| Q |
17 |
gattattaattgcacttcacatatgtttatgattttctgccgnnnnnnn-gcttgctatatatatatgccatggttctaccatatgccgcaatgccatga |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33856979 |
gattattaattgcacttcacatatgtttatgattttctgccgttttttttgcttgctatatatatatgccatggttctaccatatgctgcaatgccatga |
33857078 |
T |
|
| Q |
116 |
tttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgacatttaaattgtttaatctttgttggattgagacagacggagtccta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33857079 |
tttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgacatttaaattgtttaatctttgttggattgagacagacggagtccta |
33857178 |
T |
|
| Q |
216 |
atttagagactaatttgattaggttactaattgatggattaagttgtgacacactgcattgttgaagaa---aaactaattgatgatagaatttttccac |
312 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
33857179 |
atttagagactaatttgattaaaa-actaattgatggattaagttgtgacacactgcattgttgaagaagaaaaactaattgatgatagaattttttcac |
33857277 |
T |
|
| Q |
313 |
g---taatgaactgatgaagtctatatctttggattattaaaataggggttcatgcattttatgtccttgggaatctaatgtccagtatgtccaccgata |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33857278 |
acgttaatgaactgatgaagtctatatctttggagtattaaaataggggttcatgcattttatgtccttgggaaactaatgtccagtatgtccaccgata |
33857377 |
T |
|
| Q |
410 |
acatttgtcttacaaccgtaaaatattccgggaactctacaattaaataaacatcaactaaaagaagaattcatctcacaacaaaacttctccaaaccat |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33857378 |
acatttgtcttacaaccgtaaaatattccgggaactctacaattaaataaacatcaactaaaagaagaattcatctcacaacaaaacttctccaaaccat |
33857477 |
T |
|
| Q |
510 |
ccaaggttcttcctctgttgaagtttagttttgctcca |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
33857478 |
ccaaggttcttcctctgttgaagtttagttttgctcca |
33857515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 17 - 547
Target Start/End: Complemental strand, 33923944 - 33923408
Alignment:
| Q |
17 |
gattattaattgcacttcacatatgtttatgattttctgccgnnnnnnn-gcttgctatatatatatgccatggttctaccatatgccgcaatgccatga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33923944 |
gattattaattgcacttcacatatgtttatgattttctgccgttttttttgcttgctatatatatatgccatggttctaccatatgctgcaatgccatga |
33923845 |
T |
|
| Q |
116 |
tttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgacatttaaattgtttaatctttgttggattgagacagacggagtccta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33923844 |
tttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgacatttaaattgtttaatctttgttggattgagacagacggagtccta |
33923745 |
T |
|
| Q |
216 |
atttagagactaatttgattaggttactaattgatggattaagttgtgacacactgcattgttgaagaa---aaactaattgatgatagaatttttccac |
312 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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|
| T |
33923744 |
atttagagactaatttgattaaaa-actaattgatggattaagttgtgacacactgcattgttgaagaagaaaaactaattgatgatagaattttttcac |
33923646 |
T |
|
| Q |
313 |
g---taatgaactgatgaagtctatatctttggattattaaaataggggttcatgcattttatgtccttgggaatctaatgtccagtatgtccaccgata |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
33923645 |
acgttaatgaactgatgaagtctatatctttggagtattaaaataggggttcatgcattttatgtccttgggaaactaatgtccagtatgtccaccgata |
33923546 |
T |
|
| Q |
410 |
acatttgtcttacaaccgtaaaatattccgggaactctacaattaaataaacatcaactaaaagaagaattcatctcacaacaaaacttctccaaaccat |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33923545 |
acatttgtcttacaaccgtaaaatattccgggaactctacaattaaataaacatcaactaaaagaagaattcatctcacaacaaaacttctccaaaccat |
33923446 |
T |
|
| Q |
510 |
ccaaggttcttcctctgttgaagtttagttttgctcca |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
33923445 |
ccaaggttcttcctctgttgaagtttagttttgctcca |
33923408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 90 - 360
Target Start/End: Original strand, 47872396 - 47872674
Alignment:
| Q |
90 |
ttctaccatatgccgcaatgccatgatttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgac------atttaaattgttta |
183 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||| ||||| |||||| ||| |||| ||| ||| | |||||| ||||| | |
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| T |
47872396 |
ttctaccatatgccgtaatgccatgatttttggtttgtcgccatccaacataacattagttctctagttatatatataagtggcatatttaatttgttca |
47872495 |
T |
|
| Q |
184 |
atctttgttggattgagacagacggagtcctaatttagagactaatttgattaggtt----actaattgatggattaagttgtgacacactgcattgttg |
279 |
Q |
| |
|
|||||||||||||| || | |||||||||||||||||||||||||||| | || || | |||||||||||||||||||||| ||||||||||| |
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|
| T |
47872496 |
atctttgttggattaagtgtaatggagtcctaatttagagactaatttgatgaaattttgcacaatttgatggattaagttgtgacactctgcattgttg |
47872595 |
T |
|
| Q |
280 |
aagaaaaactaattgatgatagaatttttccacgtaatgaactgatgaagtctatatctttggattattaaaataggggtt |
360 |
Q |
| |
|
||||| || || |||||||||| ||| || |||||||||||||| |||||||||||||||| |||||||||||||||| |
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|
| T |
47872596 |
aagaactac--atcgatgatagaaatttgtcatgtaatgaactgatggagtctatatctttggagtattaaaataggggtt |
47872674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 243 - 360
Target Start/End: Complemental strand, 49547446 - 49547324
Alignment:
| Q |
243 |
taattgatggattaagttgtgacacactgcattgttgaagaa--aaactaat---tgatgatagaatttttccacgtaatgaactgatgaagtctatatc |
337 |
Q |
| |
|
||||||||||||||||||| | ||| ||||| ||||| |||| ||||| || |||||||||||||||| ||||||||||||| ||| ||| |||||| |
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|
| T |
49547446 |
taattgatggattaagttgggtcactctgcactgttggagaactaaactgatgagtgatgatagaattttttcacgtaatgaactaatgtagtttatatc |
49547347 |
T |
|
| Q |
338 |
tttggattattaaaataggggtt |
360 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
49547346 |
tttggagtattaaaataggggtt |
49547324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 200
Target Start/End: Complemental strand, 44261763 - 44261733
Alignment:
| Q |
170 |
atttaaattgtttaatctttgttggattgag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
44261763 |
atttaaattgtttaatctttgttggattgag |
44261733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 487304 - 487266
Alignment:
| Q |
353 |
taggggttcatgcattttatgtccttgggaatctaatgt |
391 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
487304 |
taggggttcatgcattttatgtccatgggaaactaatgt |
487266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 14961823 - 14961855
Alignment:
| Q |
362 |
atgcattttatgtccttgggaatctaatgtcca |
394 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
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|
| T |
14961823 |
atgcattttatgtccttgggaaactaatgtcca |
14961855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 31264611 - 31264663
Alignment:
| Q |
176 |
attgtttaatctttgttggattgagacagacggagtcctaatttagagactaa |
228 |
Q |
| |
|
|||||| ||||||||||||| ||||||| | ||||||||||||| ||||||| |
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|
| T |
31264611 |
attgttcaatctttgttggaatgagacaaatggagtcctaattttaagactaa |
31264663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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