View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11178_low_1 (Length: 648)

Name: NF11178_low_1
Description: NF11178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11178_low_1
NF11178_low_1
[»] chr4 (4 HSPs)
chr4 (11-629)||(36790830-36791471)
chr4 (545-607)||(49588179-49588241)
chr4 (559-624)||(17889422-17889487)
chr4 (560-625)||(25698807-25698872)
[»] chr3 (2 HSPs)
chr3 (523-624)||(21884059-21884160)
chr3 (561-600)||(46446238-46446277)
[»] chr2 (4 HSPs)
chr2 (545-607)||(5900542-5900604)
chr2 (523-611)||(26568351-26568439)
chr2 (559-611)||(43633442-43633494)
chr2 (569-609)||(2341338-2341378)
[»] chr1 (10 HSPs)
chr1 (560-624)||(43014366-43014430)
chr1 (560-625)||(10542391-10542456)
chr1 (561-625)||(42409596-42409660)
chr1 (561-600)||(2176357-2176396)
chr1 (561-600)||(42202430-42202469)
chr1 (561-600)||(42211298-42211337)
chr1 (561-600)||(45152017-45152056)
chr1 (561-600)||(45316452-45316491)
chr1 (565-627)||(42417638-42417700)
chr1 (561-600)||(42217273-42217312)
[»] chr5 (13 HSPs)
chr5 (560-623)||(10102805-10102868)
chr5 (560-625)||(10105887-10105952)
chr5 (560-625)||(13856015-13856080)
chr5 (560-624)||(10109301-10109365)
chr5 (560-624)||(10209773-10209837)
chr5 (561-611)||(9674763-9674813)
chr5 (554-611)||(10212318-10212375)
chr5 (560-625)||(12109390-12109455)
chr5 (565-611)||(3467667-3467713)
chr5 (569-630)||(37278735-37278796)
chr5 (560-611)||(9660279-9660330)
chr5 (572-611)||(12104608-12104647)
chr5 (555-596)||(10215918-10215959)
[»] chr8 (5 HSPs)
chr8 (560-624)||(31555169-31555233)
chr8 (560-624)||(31878236-31878300)
chr8 (560-611)||(31558254-31558305)
chr8 (566-611)||(4042245-4042290)
chr8 (570-605)||(13568429-13568464)
[»] chr6 (1 HSPs)
chr6 (560-607)||(33891609-33891656)
[»] chr7 (6 HSPs)
chr7 (561-600)||(3649499-3649538)
chr7 (561-600)||(3657616-3657655)
chr7 (561-596)||(3647054-3647089)
chr7 (566-600)||(3641230-3641264)
chr7 (572-611)||(33270839-33270878)
chr7 (559-605)||(19523282-19523328)


Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 11 - 629
Target Start/End: Complemental strand, 36791471 - 36790830
Alignment:
Q  11 cacagactatttatgcttatcccaaccactacttctagtgtctctctctacatataatgtgaatgttgtttgattaacccatttta-----------att 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||           |||    
T  36791471 cacagactatttatgcttatcccaaccactacttctagtgtctctctctacatataatgtgaatgttgtttgatgaacccattttactttttaacttatt 36791372  T
Q  100 ctcaatggcacctactgcagcaatgcttttgctccctcaatattatggaagatcatcaatgaccctgccaccctcatcctcatccccacctaaaaccact 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||    
T  36791371 ctcaatggcacctactgcagcaatgcttttgctccctcaatattatggaagatcatcaatgaccctgccaccctcatcc------ccacctaaaaccact 36791278  T
Q  200 tattttgggatgaaagcctcatcactgaagtattggatcaccaattacatacaatccaggaatcaaaaaccaccagattcacactcatgactgtttgcat 299  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36791277 tattttgggatgaaagcctcatcacttaagtattggatcaccaattacatacaatccaggaatcaaaaaccaccagattcacactcatgactgcttgcat 36791178  T
Q  300 ggttgaggtttgaagatgccctttaactttgcagctgctactaatgtaatgacttatatgatccgtagagcttttgcttgta------------------ 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      
T  36791177 ggttgaggtttgaagatgccctttaactttgcagctgctactaatgtaatgacttatatgatccgtagagcttttgcttgtagttatgttttttcttgta 36791078  T
Q  382 attatgatgtttccttttgacaatatgtaactttgatgttataaaacagcttttgcatatcaaaaatcacttgagtaatctaacttttgcagtagtgtaa 481  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36791077 attatgatgttttcttttgacaataggtaactttgatgttataaaacagcttttgcatatcaaaaatcacttgagtaatctaacttttgcagtagtgtaa 36790978  T
Q  482 aaatttaaactaattgtaggaatcctccatttggaggtttcctttaaaaaattatcatatgctgcttcaagcgacacgcacacggtattctttagtaaaa 581  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| | ||||||||||||||||||||||    
T  36790977 aaatttaaactaattgtaggaatcctccatttgaaggtttcctttaaaaaattatcgtatgctgctttaagcgacgctcacacggtattctttagtaaaa 36790878  T
Q  582 ggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgccttc 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36790877 ggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgccttc 36790830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 545 - 607
Target Start/End: Original strand, 49588179 - 49588241
Alignment:
Q  545 gcttcaagcgacacgcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgct 607  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49588179 gcttaaagtgacacgcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgct 49588241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 559 - 624
Target Start/End: Complemental strand, 17889487 - 17889422
Alignment:
Q  559 gcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtg 624  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| | | ||||||||    
T  17889487 gcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 17889422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 560 - 625
Target Start/End: Complemental strand, 25698872 - 25698807
Alignment:
Q  560 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgc 625  Q
    |||||||||||||||| ||||||||||||||||||| | || |||| ||||| | |||||||||||    
T  25698872 cacacggtattctttaataaaaggcgaaagaatagtccactatgtgatcatcacacagctccgtgc 25698807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 523 - 624
Target Start/End: Original strand, 21884059 - 21884160
Alignment:
Q  523 ctttaaaaaattatcatatgctgcttcaagcgacacgcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccg 622  Q
    |||| |||||||| | ||||| |||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | ||||||    
T  21884059 ctttcaaaaattaacgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccg 21884158  T
Q  623 tg 624  Q
    ||    
T  21884159 tg 21884160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 561 - 600
Target Start/End: Complemental strand, 46446277 - 46446238
Alignment:
Q  561 acacggtattctttagtaaaaggcgaaagaatagttcgct 600  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46446277 acacggtattctttagtaaaaggcgaaagaatagttcgct 46446238  T

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Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 545 - 607
Target Start/End: Complemental strand, 5900604 - 5900542
Alignment:
Q  545 gcttcaagcgacacgcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgct 607  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5900604 gcttaaagtgacacgcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgct 5900542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 523 - 611
Target Start/End: Complemental strand, 26568439 - 26568351
Alignment:
Q  523 ctttaaaaaattatcatatgctgcttcaagcgacacgcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatc 611  Q
    |||| |||||||| | ||||| |||| ||| ||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  26568439 ctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcaaaagaatagttcgctatgtgctcatc 26568351  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 559 - 611
Target Start/End: Original strand, 43633442 - 43633494
Alignment:
Q  559 gcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatc 611  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43633442 gcacacggtattctttagtaaaaggcgaaagaatagttcactttgtgctcatc 43633494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 609
Target Start/End: Original strand, 2341338 - 2341378
Alignment:
Q  569 ttctttagtaaaaggcgaaagaatagttcgctttgtgctca 609  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  2341338 ttcttttgtaaaaggcgaaagaatagttcgctttgtgctca 2341378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 560 - 624
Target Start/End: Original strand, 43014366 - 43014430
Alignment:
Q  560 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtg 624  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| | | ||||||||    
T  43014366 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 43014430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 560 - 625
Target Start/End: Complemental strand, 10542456 - 10542391
Alignment:
Q  560 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgc 625  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||| | | |||||||||    
T  10542456 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgc 10542391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 561 - 625
Target Start/End: Complemental strand, 42409660 - 42409596
Alignment:
Q  561 acacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgc 625  Q
    |||||||||||||||||||||||||||||||||||||||| |||  ||||| | |||||||||||    
T  42409660 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacagctccgtgc 42409596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 561 - 600
Target Start/End: Original strand, 2176357 - 2176396
Alignment:
Q  561 acacggtattctttagtaaaaggcgaaagaatagttcgct 600  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2176357 acacggtattctttagtaaaaggcgaaagaatagttcgct 2176396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 561 - 600
Target Start/End: Original strand, 42202430 - 42202469
Alignment:
Q  561 acacggtattctttagtaaaaggcgaaagaatagttcgct 600  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42202430 acacggtattctttagtaaaaggcgaaagaatagttcgct 42202469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 561 - 600
Target Start/End: Original strand, 42211298 - 42211337
Alignment:
Q  561 acacggtattctttagtaaaaggcgaaagaatagttcgct 600  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42211298 acacggtattctttagtaaaaggcgaaagaatagttcgct 42211337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 561 - 600
Target Start/End: Complemental strand, 45152056 - 45152017
Alignment:
Q  561 acacggtattctttagtaaaaggcgaaagaatagttcgct 600  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45152056 acacggtattctttagtaaaaggcgaaagaatagttcgct 45152017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 561 - 600
Target Start/End: Original strand, 45316452 - 45316491
Alignment:
Q  561 acacggtattctttagtaaaaggcgaaagaatagttcgct 600  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45316452 acacggtattctttagtaaaaggcgaaagaatagttcgct 45316491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 565 - 627
Target Start/End: Complemental strand, 42417700 - 42417638
Alignment:
Q  565 ggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgcct 627  Q
    ||||||||||||||||||||||||||||| |||||| |||  ||||| | |||||||||||||    
T  42417700 ggtattctttagtaaaaggcgaaagaataattcgctatgtcatcatcacacagctccgtgcct 42417638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 561 - 600
Target Start/End: Original strand, 42217273 - 42217312
Alignment:
Q  561 acacggtattctttagtaaaaggcgaaagaatagttcgct 600  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  42217273 acacagtattctttagtaaaaggcgaaagaatagttcgct 42217312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 560 - 623
Target Start/End: Complemental strand, 10102868 - 10102805
Alignment:
Q  560 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgt 623  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||| | |||||||||    
T  10102868 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacagctccgt 10102805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 560 - 625
Target Start/End: Complemental strand, 10105952 - 10105887
Alignment:
Q  560 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgc 625  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||| | | |||||||||    
T  10105952 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgc 10105887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 560 - 625
Target Start/End: Complemental strand, 13856080 - 13856015
Alignment:
Q  560 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgc 625  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||| | | |||||||||    
T  13856080 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcactcggctccgtgc 13856015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 560 - 624
Target Start/End: Complemental strand, 10109365 - 10109301
Alignment:
Q  560 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtg 624  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||| | | ||||||||    
T  10109365 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 10109301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 560 - 624
Target Start/End: Original strand, 10209773 - 10209837
Alignment:
Q  560 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtg 624  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||| | | ||||||||    
T  10209773 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgttcatcacacggctccgtg 10209837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 561 - 611
Target Start/End: Original strand, 9674763 - 9674813
Alignment:
Q  561 acacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatc 611  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  9674763 acacggtattctttagtaaaaggcgaaagaatagttcactttgtgatcatc 9674813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 554 - 611
Target Start/End: Original strand, 10212318 - 10212375
Alignment:
Q  554 gacacgcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatc 611  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |||||    
T  10212318 gacactcacacagtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatc 10212375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 560 - 625
Target Start/End: Original strand, 12109390 - 12109455
Alignment:
Q  560 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgc 625  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||| |||||  || |||||||||    
T  12109390 cacacggtattctttagtaaaaggcgaaagaatagtttgctatgtgatcatcaggcggctccgtgc 12109455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 565 - 611
Target Start/End: Original strand, 3467667 - 3467713
Alignment:
Q  565 ggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatc 611  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||    
T  3467667 ggtattctttagtaaaaggcgaaagaatagtttgctttgagctcatc 3467713  T

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Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 569 - 630
Target Start/End: Original strand, 37278735 - 37278796
Alignment:
Q  569 ttctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgccttct 630  Q
    |||||||||||||||||||||||||||||| | |||||||||| | | ||||||| ||||||    
T  37278735 ttctttagtaaaaggcgaaagaatagttcgttatgtgctcatcacacggctccgttccttct 37278796  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 611
Target Start/End: Original strand, 9660279 - 9660330
Alignment:
Q  560 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatc 611  Q
    ||||| ||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  9660279 cacacagtattctttagtaaaaggcaaaataatagttcgctatgtgatcatc 9660330  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 611
Target Start/End: Original strand, 12104608 - 12104647
Alignment:
Q  572 tttagtaaaaggcgaaagaatagttcgctttgtgctcatc 611  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  12104608 tttagtaaaaggcgaaagaatagttcgctatgtgatcatc 12104647  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 596
Target Start/End: Original strand, 10215918 - 10215959
Alignment:
Q  555 acacgcacacggtattctttagtaaaaggcgaaagaatagtt 596  Q
    |||| |||| |||||||||||||||||||| |||||||||||    
T  10215918 acactcacaaggtattctttagtaaaaggcaaaagaatagtt 10215959  T

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Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 560 - 624
Target Start/End: Original strand, 31555169 - 31555233
Alignment:
Q  560 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtg 624  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||| | | ||||||||    
T  31555169 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 31555233  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 560 - 624
Target Start/End: Complemental strand, 31878300 - 31878236
Alignment:
Q  560 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtg 624  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||| | | ||||||||    
T  31878300 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 31878236  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 560 - 611
Target Start/End: Original strand, 31558254 - 31558305
Alignment:
Q  560 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatc 611  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  31558254 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatc 31558305  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 566 - 611
Target Start/End: Original strand, 4042245 - 4042290
Alignment:
Q  566 gtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatc 611  Q
    |||||||||||| |||||||||||||||||| |||||| |||||||    
T  4042245 gtattctttagtcaaaggcgaaagaatagtttgctttgagctcatc 4042290  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 570 - 605
Target Start/End: Original strand, 13568429 - 13568464
Alignment:
Q  570 tctttagtaaaaggcgaaagaatagttcgctttgtg 605  Q
    ||||||||||||||||||||||||||||||| ||||    
T  13568429 tctttagtaaaaggcgaaagaatagttcgctatgtg 13568464  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 560 - 607
Target Start/End: Complemental strand, 33891656 - 33891609
Alignment:
Q  560 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgct 607  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33891656 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgct 33891609  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 561 - 600
Target Start/End: Complemental strand, 3649538 - 3649499
Alignment:
Q  561 acacggtattctttagtaaaaggcgaaagaatagttcgct 600  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3649538 acacggtattctttagtaaaaggcgaaagaatagttcgct 3649499  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 561 - 600
Target Start/End: Complemental strand, 3657655 - 3657616
Alignment:
Q  561 acacggtattctttagtaaaaggcgaaagaatagttcgct 600  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3657655 acacggtattctttagtaaaaggcgaaagaatagttcgct 3657616  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 561 - 596
Target Start/End: Complemental strand, 3647089 - 3647054
Alignment:
Q  561 acacggtattctttagtaaaaggcgaaagaatagtt 596  Q
    ||||||||||||||||||||||||||||||||||||    
T  3647089 acacggtattctttagtaaaaggcgaaagaatagtt 3647054  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 566 - 600
Target Start/End: Complemental strand, 3641264 - 3641230
Alignment:
Q  566 gtattctttagtaaaaggcgaaagaatagttcgct 600  Q
    |||||||||||||||||||||||||||||||||||    
T  3641264 gtattctttagtaaaaggcgaaagaatagttcgct 3641230  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 611
Target Start/End: Complemental strand, 33270878 - 33270839
Alignment:
Q  572 tttagtaaaaggcgaaagaatagttcgctttgtgctcatc 611  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  33270878 tttagtaaaaggcgaaagaatagtccgctttgtactcatc 33270839  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 559 - 605
Target Start/End: Original strand, 19523282 - 19523328
Alignment:
Q  559 gcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtg 605  Q
    |||||||| |||||||||||||||||||||||||  |||||| ||||    
T  19523282 gcacacggaattctttagtaaaaggcgaaagaattattcgctctgtg 19523328  T

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