View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11178_low_3 (Length: 331)
Name: NF11178_low_3
Description: NF11178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11178_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 43337589 - 43337889
Alignment:
| Q |
17 |
agatccaatttagccctcgagagtatgattttatctggcattcagcaacatccgtagcacagtcttcatctttggtcttgtatcagaggatgtgcttaca |
116 |
Q |
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| T |
43337589 |
agatccaatttagccctcgagagtgtgattttatctggcattcagcaacatccgtagcacagtcttcatctttggtcttgtatcagaggatgagcttaca |
43337688 |
T |
|
| Q |
117 |
caaacaagagcaatctccagaattgcaagcatttggtttctaacagcctgtgatgttctactaacgttcaaatcaagaatgatatcatgatttcttgaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43337689 |
caaacaagagcaatctccagaattgcaagcatttggtttctaacagcctgtgatgttctactaacgttcaaatcaagaatgatatcatgatttcttgaat |
43337788 |
T |
|
| Q |
217 |
tacgtaaaacccacttcaccaattcagttccctcagttactgcaggtctgcctgttagcaactctagtagaatgacaccaaagctatacacattccctgc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43337789 |
tacgtaaaacccacttcaccaattcagttccctcagttactgcaggtctgcctgttagcaactctagtagaatgacaccaaagctatacacattccctgc |
43337888 |
T |
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| Q |
317 |
c |
317 |
Q |
| |
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| |
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| T |
43337889 |
c |
43337889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 35 - 311
Target Start/End: Original strand, 43333148 - 43333424
Alignment:
| Q |
35 |
gagagtatgattttatctggcattcagcaacatccgtagcacagtcttcatctttggtcttgtatcagaggatgtgcttacacaaacaagagcaatctcc |
134 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
43333148 |
gagagtatgattttatctggcattcagcaacattcttagcacagtcttcatctttggtctttcatcaggggatgtgcttacacaaacaagagcaatctcc |
43333247 |
T |
|
| Q |
135 |
agaattgcaagcatttggtttctaacagcctgtgatgttctactaacgttcaaatcaagaatgatatcatgatttcttgaattacgtaaaacccacttca |
234 |
Q |
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|||||| ||||||||||||||||||||| || ||||||| | || || ||||||||||||||| ||| ||||||||||||||||| ||||||||||| | |
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| T |
43333248 |
agaatttcaagcatttggtttctaacagactctgatgttttgctgacattcaaatcaagaatgtaatcttgatttcttgaattacgcaaaacccacttta |
43333347 |
T |
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| Q |
235 |
ccaattcagttccctcagttactgcaggtctgcctgttagcaactctagtagaatgacaccaaagctatacacattc |
311 |
Q |
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||||||||| ||||| ||| |||| ||| | || || ||||| || |||||||| || |||||||||||||||||| |
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| T |
43333348 |
ccaattcagctcccttagtcactgagggttttccggtcagcaattccagtagaatcaccccaaagctatacacattc |
43333424 |
T |
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