View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11178_low_5 (Length: 302)
Name: NF11178_low_5
Description: NF11178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11178_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 98 - 287
Target Start/End: Complemental strand, 43602042 - 43601853
Alignment:
| Q |
98 |
ttgatcttaaccgtttcctgacttatctggtggcattaattgtaagtccattaatggtactccttcaagtttcaatcataaaagcagctcaccaaatggc |
197 |
Q |
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| T |
43602042 |
ttgatcttaaccgtttcctgacttatctggtggcattaattgtaagtccattaatggtactccttcaagtttcaatcataaaagcagctcaccaaatggc |
43601943 |
T |
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| Q |
198 |
ctgaaatttgacatcccaatttccatatgtatttagtgtctctttggtttgtgttatgattttgtttctgatgtcaccaaatgtgctttt |
287 |
Q |
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| T |
43601942 |
ctgaaatttgacatcccaatttccatatgtatttagtgtctctttggtttgtgttatgattttgtttctgatgtcaccaaatgtgctttt |
43601853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 43602100 - 43602041
Alignment:
| Q |
1 |
tcatttgagggaaatataaataaatttcttttgaattaactgatgaggactgattgattatttt |
64 |
Q |
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| T |
43602100 |
tcatttgagggaaatataaat----ttcttttgaattaactgatgaggactgattgattatttt |
43602041 |
T |
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