View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11178_low_8 (Length: 255)

Name: NF11178_low_8
Description: NF11178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11178_low_8
NF11178_low_8
[»] chr6 (2 HSPs)
chr6 (1-43)||(4182420-4182462)
chr6 (1-43)||(4743264-4743306)
[»] chr1 (5 HSPs)
chr1 (198-255)||(51838359-51838416)
chr1 (49-135)||(51855577-51855666)
chr1 (164-253)||(51855443-51855533)
chr1 (206-255)||(51832848-51832897)
chr1 (159-203)||(51756199-51756242)
[»] scaffold0710 (2 HSPs)
scaffold0710 (49-135)||(2972-3061)
scaffold0710 (159-255)||(2201-2299)
[»] chr8 (1 HSPs)
chr8 (51-128)||(13951694-13951770)


Alignment Details
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4182420 - 4182462
Alignment:
Q  1 ctgcaaggtacaaaccattaccaagcaactaccagaaagggat 43  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  4182420 ctgcaagatacaaaccattaccaagcaactaccagaaagggat 4182462  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4743264 - 4743306
Alignment:
Q  1 ctgcaaggtacaaaccattaccaagcaactaccagaaagggat 43  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  4743264 ctgcaagatacaaaccattaccaagcaactaccagaaagggat 4743306  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 51838416 - 51838359
Alignment:
Q  198 attgaaaatagtagagtaaacaataagagaaatttagaatctatggtggaagatttga 255  Q
    ||||| |||||||||||||| ||||| ||||||||| ||||||||| |||||||||||    
T  51838416 attgagaatagtagagtaaataataaaagaaatttataatctatggaggaagatttga 51838359  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 51855666 - 51855577
Alignment:
Q  49 ataactgcaaggacttaatttttc-tcacgtcaacctttaaatattct--atctctatatgatattaaattaagcttgtttgaggtcaat 135  Q
    |||||||||||| ||||||||||  ||||||| ||||| ||||||| |  || ||||| ||||||| |||||||||||||||| ||||||    
T  51855666 ataactgcaaggtcttaattttttgtcacgtccaccttcaaatatttttcatatctatctgatattgaattaagcttgtttgaagtcaat 51855577  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 51855533 - 51855443
Alignment:
Q  164 atgcagaatccaaccaatcatatagaaaagcaaaattgaaaatagtagag-taaacaataagagaaatttagaatctatggtggaagattt 253  Q
    |||||||||||||||||| ||||||||||  ||||| || || | ||||| || | | ||||||||||||| ||||||  |||||||||||    
T  51855533 atgcagaatccaaccaatgatatagaaaaagaaaatcgagaacattagagttatatattaagagaaatttataatctagagtggaagattt 51855443  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 51832897 - 51832848
Alignment:
Q  206 tagtagagtaaacaataagagaaatttagaatctatggtggaagatttga 255  Q
    ||||||||| || ||||||||||||||| ||||||||  |||||||||||    
T  51832897 tagtagagtcaataataagagaaatttataatctatgtaggaagatttga 51832848  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 51756199 - 51756242
Alignment:
Q  159 gcagaatgcagaatccaaccaatcatatagaaaagcaaaattgaa 203  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||    
T  51756199 gcagaatgcagaatccaaccaatgatgtagaaaa-caaaattgaa 51756242  T

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Target: scaffold0710 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 3061 - 2972
Alignment:
Q  49 ataactgcaaggacttaatttttc-tcacgtcaacctttaaatattct--atctctatatgatattaaattaagcttgtttgaggtcaat 135  Q
    |||||||||||| ||||||||||  ||||||| ||||| ||||||| |  || ||||| ||||||| |||||||||||||||| ||||||    
T  3061 ataactgcaaggtcttaattttttgtcacgtccaccttcaaatatttttcatatctatctgatattgaattaagcttgtttgaagtcaat 2972  T

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Target: scaffold0710; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 2201 - 2299
Alignment:
Q  159 gcagaatgcagaatccaaccaatcatatagaa--aagcaaaattgaaaatagtagagtaaacaataagagaaatttagaatctatggtggaagatttga 255  Q
    |||||| ||||||| ||||||||  |||||||  ||  ||||| || | ||||||||| || ||||||||||||||| ||||||||  |||||||||||    
T  2201 gcagaaagcagaattcaaccaatgttatagaaggaaaaaaaatagagactagtagagtcaataataagagaaatttataatctatgtaggaagatttga 2299  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 13951694 - 13951770
Alignment:
Q  51 aactgcaaggacttaatttttctcacgtcaacctttaaatattctatctctatatgatattaaattaagcttgtttga 128  Q
    ||||||||||||| || |||  |||| || |||||||||||||| |||||||| ||||||| |||| |||||||||||    
T  13951694 aactgcaaggactaaactttg-tcacatctacctttaaatattccatctctatttgatattgaatttagcttgtttga 13951770  T

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