View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11179_high_11 (Length: 314)

Name: NF11179_high_11
Description: NF11179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11179_high_11
NF11179_high_11
[»] scaffold0078 (1 HSPs)
scaffold0078 (18-293)||(11999-12271)
[»] chr6 (3 HSPs)
chr6 (75-302)||(15379249-15379476)
chr6 (84-302)||(16689390-16689608)
chr6 (219-302)||(16689622-16689705)
[»] chr8 (2 HSPs)
chr8 (18-292)||(25376893-25377154)
chr8 (18-290)||(25404885-25405136)
[»] scaffold0070 (1 HSPs)
scaffold0070 (18-292)||(55449-55710)
[»] chr5 (2 HSPs)
chr5 (61-293)||(39815688-39815919)
chr5 (25-69)||(39816198-39816242)
[»] chr2 (1 HSPs)
chr2 (18-293)||(25859998-25860271)
[»] chr3 (2 HSPs)
chr3 (84-268)||(30178320-30178504)
chr3 (18-71)||(30178238-30178291)
[»] chr1 (1 HSPs)
chr1 (250-293)||(18426277-18426320)


Alignment Details
Target: scaffold0078 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 11999 - 12271
Alignment:
Q  18 atgtcaccataatttaacattctagttttgaacttgttttgaaaaatgtctttcatgtaaccttcctttaggatgaatattgtttgtgttaccttgttgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || ||||  ||||| |||||  |||||||||||||||||||||    
T  11999 atgtcaccataatttaacattctagttttgaacttgttttgaaaaatatatttcatata-cctttatttagcatgaaacttgtttgtgttaccttgttgg 12097  T
Q  118 agcaactttgttttagttttacttatggaggtagaaaactaagtttgagattaaactcacataaccttgtttcatcctttgttcatctatataaattttc 217  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||  ||    
T  12098 agcaactttgttttagttttacta--ggaggtagaaaactaagtttgagattaaactcacataacctttcttcatcctttgttcatctatataaatggtc 12195  T
Q  218 tctagtagatggttcatgacttcctggatcttttgttgatggtttgtataagttgtctttgacttcacataacctt 293  Q
    |||  || |||||| |||||| ||||||||||||||||||| ||| ||||| || |||||||||||||||||||||    
T  12196 tctgctatatggttaatgactccctggatcttttgttgatgatttatataatttttctttgacttcacataacctt 12271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 75 - 302
Target Start/End: Original strand, 15379249 - 15379476
Alignment:
Q  75 taaccttcctttaggatgaatattgtttgtgttaccttgttggagcaactttgttttagttttacttatggaggtagaaaactaagtttgagattaaact 174  Q
    |||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  15379249 taaccttcatttaggatgaatcttgtttgcgttaccttgttggagcaactttgttttagttttactcttggaggtagaaaactaagttttagattaaact 15379348  T
Q  175 cacataaccttgtttcatcctttgttcatctatataaattttctctagtagatggttcatgacttcctggatcttttgttgatggtttgtataagttgtc 274  Q
    ||||| || ||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  15379349 cacatgactttgcttcatcggttgttcatctatataaattgtctctagtagatggttcatgactccctagatcttttgttgatggtttgtataagttgtc 15379448  T
Q  275 tttgacttcacataaccttaattcatct 302  Q
    |||||||||||||| |||| ||||||||    
T  15379449 tttgacttcacatatccttgattcatct 15379476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 84 - 302
Target Start/End: Original strand, 16689390 - 16689608
Alignment:
Q  84 tttaggatgaatattgtttgtgttaccttgttggagcaactttgttttagttttacttatggaggtagaaaactaagtttgagattaaactcacataacc 183  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||    
T  16689390 tttaggatgaatcttgtttgtgttaccctgttggagcaactttgttttagttttcctcttggaggtagaaaactaagtttgagattaaactcacataacc 16689489  T
Q  184 ttgtttcatcctttgttcatctatataaattttctctagtagatggttcatgacttcctggatcttttgttgatggtttgtataagttgtctttgacttc 283  Q
    ||| ||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||| ||| ||||||||||| ||||||||||||||||||||||||    
T  16689490 ttgcttcatcctttgttcatctatataaactgtctctagtagatggttcatcactccctcgattttttgttgatgatttgtataagttgtctttgacttc 16689589  T
Q  284 acataaccttaattcatct 302  Q
    |||||||||| ||| ||||    
T  16689590 acataaccttgatttatct 16689608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 16689622 - 16689705
Alignment:
Q  219 ctagtagatggttcatgacttcctggatcttttgttgatggtttgtataagttgtctttgacttcacataaccttaattcatct 302  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  16689622 ctagtagatggttcatgactccctggatcttttgttgatgatttgtataagttgtctttgacttcacataaccttgattcatct 16689705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 25376893 - 25377154
Alignment:
Q  18 atgtcaccataatttaacattctagttttgaacttgttttgaaaaatgtctttcatgtaaccttcctttaggatgaatattgtttgtgttaccttgttgg 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||| |||||| | |||||||    
T  25376893 atgtcaccatattttaacattctagttttgaacttgttttgaaaaatatctttcatgta-ccttcttttaggatgaatcttgtctgtgtttctttgttgg 25376991  T
Q  118 agcaactttgttttagttttacttatggaggtagaaaactaagtttgagattaaactcacataaccttgtttcatcctttgttcatctatataaattttc 217  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||  |||| |||||||||||||||||||||||||             
T  25376992 agcaactttgttttagttttactcttggaggtagaaaagtaagtttgagattaaactcatgtaactttgtttcatcctttgttcatctata--------- 25377082  T
Q  218 tctagtagatggttcatgacttcctggatcttttgttgatggtttgtataagttgtctttgacttcacataacct 292  Q
        ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25377083 ---cgtagatggttcatgactccctggatcttttgttgatggtttatataagttgtctttgacttcacataacct 25377154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 25404885 - 25405136
Alignment:
Q  18 atgtcaccataatttaacattctagttttgaacttgttttgaaaaatgtctttcatgtaaccttcctttaggatgaatattgtttgtgttaccttgttgg 117  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| |||||  |||||||||||| |||||||| || | |||||||    
T  25404885 atgtcaccaaattttaacattctagttttgaacttgttttgaaaaatttctttcatgt-accttattttaggatgaatcttgtttgtttttctttgttgg 25404983  T
Q  118 agcaactttgttttagttttacttatgga-ggtagaaaactaagtttgagattaaactcacataaccttgtttcatcctttgttcatctatataaatttt 216  Q
    | |||||||||||||||||||||  |||| ||||||||| ||||||||||||||||                     ||||||||||||||| ||||  |    
T  25404984 aacaactttgttttagttttactcttggagggtagaaaagtaagtttgagattaaa---------------------ctttgttcatctatacaaatggt 25405062  T
Q  217 ctctagtagatggttcatgacttcctggatcttttgttgatggtttgtataagttgtctttgacttcacataac 290  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25405063 ctctagtagatggttcatgactccctggatcttttgttgatggtttatataagttgtctttgacttcacataac 25405136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 55710 - 55449
Alignment:
Q  18 atgtcaccataatttaacattctagttttgaacttgttttgaaaaatgtctttcatgtaaccttcctttaggatgaatattgtttgtgttaccttgttgg 117  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| ||||  |||||||||||| |||||||| || | |||||||    
T  55710 atgtcaccaaattttaacattctagttttgaacttgttttgaaaaatttctttcatgta-ccttattttaggatgaatcttgtttgtttttctttgttgg 55612  T
Q  118 agcaactttgttttagttttacttatggaggtagaaaactaagtttgagattaaactcacataaccttgtttcatcctttgttcatctatataaattttc 217  Q
    | |||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||             
T  55611 aacaactttgttttagttttactcttggaggtagaaaagtaagtttgagattaaactcacgtaactttgtttcatcctttgttcatctata--------- 55521  T
Q  218 tctagtagatggttcatgacttcctggatcttttgttgatggtttgtataagttgtctttgacttcacataacct 292  Q
        ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  55520 ---cgtagatggttcatgactccctggatcttttgttgatggtttatataagttgtctttgacttcacataacct 55449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 61 - 293
Target Start/End: Complemental strand, 39815919 - 39815688
Alignment:
Q  61 aaatgtctttcatgtaaccttcctttaggatgaatattgtttgtgttaccttgttggagcaactttgttttagttttacttatggaggtagaaaactaag 160  Q
    |||| ||||||||||||||||| ||| |||||||| || |||||||| | ||||||||  ||| ||||||||||||||||  ||||||||  ||||||||    
T  39815919 aaatatctttcatgtaaccttcatttgggatgaatcttatttgtgtttctttgttggatgaaccttgttttagttttactcttggaggtatgaaactaag 39815820  T
Q  161 tttgagattaaactcacataaccttgtttcatcctttgttcatctatataaattttctctagtagatggttcatgacttcctggatcttttgttgatggt 260  Q
    |||||| ||  ||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||    
T  39815819 tttgag-ttgcactcacataaccttacttcatcctttgttcatctatataaattgtctctagtagatgattcatgacttcctggatcttttattgatggt 39815721  T
Q  261 ttgtataagttgtctttgacttcacataacctt 293  Q
    ||||||||||||||||||| |||||||||||||    
T  39815720 ttgtataagttgtctttgatttcacataacctt 39815688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 39816242 - 39816198
Alignment:
Q  25 cataatttaacattctagttttgaacttgttttgaaaaatgtctt 69  Q
    |||||||||| ||| ||||||||||||||||||||||||| ||||    
T  39816242 cataatttaagattttagttttgaacttgttttgaaaaatatctt 39816198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 25860271 - 25859998
Alignment:
Q  18 atgtcaccataatttaacattctagttttgaacttgttttgaaaaatgtctttcatgtaaccttcctttaggatgaatattgtttgtgttaccttgttgg 117  Q
    |||||| |||||||| | ||||||||||| ||||||||||||||||  ||||| ||||| | ||||| |||||||||| || |||  ||| | |||||||    
T  25860271 atgtcaacataatttgagattctagttttaaacttgttttgaaaaagatcttttatgta-ctttcctctaggatgaatcttatttcagtttctttgttgg 25860173  T
Q  118 agcaactttgttttagttttacttatggaggtagaaaactaagtttgagattaaactcacataaccttgtttcatcctttgttcatctatataaattttc 217  Q
       ||||| |||| | ||| |||  | ||||||| ||||||||||||||||| |||||| ||||| ||  ||| || || ||| ||||||||||||| ||    
T  25860172 gtgaacttggtttgaattt-actgttagaggtaggaaactaagtttgagattgaactcatataactttacttcctctttagttgatctatataaattatc 25860074  T
Q  218 tctagtagatggttcatgacttcctggatcttttgttgatggtttgtataagttgtctttgacttcacataacctt 293  Q
    |||||| |||||||||||||| | ||||||||||||||||||||| | |||||| || ||||||||||||| ||||    
T  25860073 tctagttgatggttcatgactccatggatcttttgttgatggtttatgtaagttatccttgacttcacatagcctt 25859998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 84 - 268
Target Start/End: Original strand, 30178320 - 30178504
Alignment:
Q  84 tttaggatgaatattgtttgtgttaccttgttggagcaactttgttttagttttacttatggaggtagaaaactaagtttgagattaaactcacataacc 183  Q
    |||||||||||| || ||||| || | ||||||||  |||||  |||||||||||||  ||||||||| ||||||||| |||| || |||| |||||||     
T  30178320 tttaggatgaatcttatttgtatttctttgttggatgaacttgattttagttttactcttggaggtaggaaactaagtctgaggttgaacttacataact 30178419  T
Q  184 ttgtttcatcctttgttcatctatataaattttctctagtagatggttcatgacttcctggatcttttgttgatggtttgtataa 268  Q
    ||||||||||||||||| |||||||||||    || || | ||||||||||| || || |||||||||||||||||||| |||||    
T  30178420 ttgtttcatcctttgttgatctatataaacagactttatttgatggttcatggctcccaggatcttttgttgatggtttatataa 30178504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 30178238 - 30178291
Alignment:
Q  18 atgtcaccataatttaacattctagttttgaacttgttttgaaaaatgtctttc 71  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||    
T  30178238 atgtcaacataatttaatattctagttttgaacttgttttgaaaaatatctttc 30178291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 18426320 - 18426277
Alignment:
Q  250 ttgttgatggtttgtataagttgtctttgacttcacataacctt 293  Q
    ||||||||||||| |||||||||||||| |||||||||||||||    
T  18426320 ttgttgatggtttatataagttgtcttttacttcacataacctt 18426277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University