View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11179_high_13 (Length: 294)
Name: NF11179_high_13
Description: NF11179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11179_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 34687602 - 34687873
Alignment:
| Q |
18 |
gcaaggtcccgtgttcaaccaagtataacaagaggcattactgtggaaattcccaaagtgacttggaatgatattgggggattgaaagacgtgaaggttg |
117 |
Q |
| |
|
|||||||| | |||| ||||||||||||||| |||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34687602 |
gcaaggtctcttgttgaaccaagtataacaaaaggcgttactctggaaattcccaaagtgacttggaaagatattgggggattgaaagacgtgaaggttg |
34687701 |
T |
|
| Q |
118 |
tattttctaaattttgcatttgatttttac---tgaaaatatcacatttcaacaatgtctgagggtatccctcccttggacagacaaagctcaagcaagc |
214 |
Q |
| |
|
|| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||| ||||||||||||||| | |||| || |||| |
|
|
| T |
34687702 |
tactttgtaaattttgcatttgatttttacttttgaaaatatcacatttcagcaatgtctgagtgtat-cctcccttggacagaaagagctagagaaagc |
34687800 |
T |
|
| Q |
215 |
tgtcgagtggcctatgaagcatcctgctgcgttttcaagattgggaataacccctattcgtggaattcttctc |
287 |
Q |
| |
|
||| ||||||||||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34687801 |
tgttgagtggcctatgaagtatcctgcttcgttttcgagattgggaataaaccctattcgtggaattcttctc |
34687873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 34747565 - 34747825
Alignment:
| Q |
18 |
gcaaggtcccgtgttcaaccaagtataacaagaggcattactgtggaaattcccaaagtgacttggaatgatattgggggattgaaagacgtgaaggttg |
117 |
Q |
| |
|
|||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34747565 |
gcaaggtcacttgttcaaccaagcataacaagaggcattactgtggaaattcccaaagtgacgtggaaagatattgggggattgaaagacgtgaaggttg |
34747664 |
T |
|
| Q |
118 |
tattttctaaattttgcatttgattttta--ctgaaaatatcacatttcaacaatgtctgagggtatccctcccttggacagacaaagctcaagcaagct |
215 |
Q |
| |
|
|| ||| | |||||||||||||||||||| |||||||||| ||||||||||| |||| || ||||||||||||||||||| |||||||| |
|
|
| T |
34747665 |
tactttgttaattttgcatttgatttttactctgaaaatat----------caatgtctgagtgtat-tcttccttggacagacaaagctcgagcaagct |
34747753 |
T |
|
| Q |
216 |
gtcgagtggcctatgaagcatcctgctgcgttttcaagattgggaataacccctattcgtggaattcttctc |
287 |
Q |
| |
|
| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34747754 |
attgagtggcctatgaagcatcctgatgcattttcaagattgggaataacccctatccgtggaattcttctc |
34747825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University