View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11179_high_20 (Length: 208)
Name: NF11179_high_20
Description: NF11179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11179_high_20 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 36779960 - 36779763
Alignment:
| Q |
11 |
cacagaaatgcaatccacaagacaagaaagcgttgctccaaatcaagaaggaactcaacaaccctacgtctctatcctcgtggaaccctcgcaaaaattg |
110 |
Q |
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| T |
36779960 |
cacagaaatgcaacccacaagacaagaaagcgttgctccaaatcaagaaggaactcaacaaccctacgtctctatcctcgtggaaccctcgcaaaaattg |
36779861 |
T |
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| Q |
111 |
ttgtgactgggtatttatccattgcgacgtaacaacttctcgtgtcatttggctcgctatccaattctccagcccagaccaattcaccaccccattcc |
208 |
Q |
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| T |
36779860 |
ttgtgactgggtatttatccattgcgacgtaacaacttctcgtgtcatttggctcgctatccaattctcaagcccagaccaattcaccaccccattcc |
36779763 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 18141215 - 18141264
Alignment:
| Q |
25 |
ccacaagacaagaaagcgttgctccaaatcaagaaggaactcaacaaccc |
74 |
Q |
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| T |
18141215 |
ccacaagacaaaaaagccctactccaaatcaagaaagaactcaacaaccc |
18141264 |
T |
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