View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11179_high_4 (Length: 434)
Name: NF11179_high_4
Description: NF11179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11179_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 207 - 415
Target Start/End: Complemental strand, 7123166 - 7122959
Alignment:
| Q |
207 |
cagaatagagaattgatctaagacataagcattatacaaaacagggtctctagtaattttcactataagtttcaactacaccacatccttatataactat |
306 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7123166 |
cagaatagagaattgatctaagacata-gcattatacaaaacagggtctctagtaattttcactataagtttcaactacaccacatccttatataactat |
7123068 |
T |
|
| Q |
307 |
attaattctccaaaatctctgtatgttgttatccataattccataaatatccttctactaattcacattcaccgacacatacactaatatcacacacaac |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7123067 |
attaattctccaaaatctctgtatgttgttatccataattccataaatatccttctactaattcacattcaccgacacatacactaataccacacacaac |
7122968 |
T |
|
| Q |
407 |
attgtcaac |
415 |
Q |
| |
|
||||||||| |
|
|
| T |
7122967 |
attgtcaac |
7122959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 7123371 - 7123244
Alignment:
| Q |
1 |
acaccagacacgtcaacgcccgtagtaatttaataaaatgacgcactatcagacacgcagaagtgctacaaagatcataaatttactatttttctcagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7123371 |
acaccagacacgtcaacgcccgtagtaatttaataaaatgacgcactatcagacacgcagaagtgctacaaagatcataaatttactatttttctcagtg |
7123272 |
T |
|
| Q |
101 |
cccattattccattgagcttccaataca |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
7123271 |
cccattattccattgagcttccaataca |
7123244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 7122890 - 7122824
Alignment:
| Q |
62 |
agtgctacaaagatcataaatttactatttttctcagtgcccattattccattgagcttccaataca |
128 |
Q |
| |
|
||||||| | |||||||||||||||| || || | |||||||||||||||||||||||||||||||| |
|
|
| T |
7122890 |
agtgctaaagagatcataaatttactcttctttttagtgcccattattccattgagcttccaataca |
7122824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 336
Target Start/End: Complemental strand, 7123546 - 7123469
Alignment:
| Q |
259 |
gtaattttcactataagtttcaactacaccacatccttatataactatattaattctccaaaatctctgtatgttgtt |
336 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| ||| |||| ||||||||||||||| |||||| ||| |||||| |
|
|
| T |
7123546 |
gtaattttccctaggagtttcaactacaccacaatcttgcataattatattaattctccataatctcagtaagttgtt |
7123469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University