View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11179_high_8 (Length: 352)
Name: NF11179_high_8
Description: NF11179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11179_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 38867223 - 38867549
Alignment:
| Q |
19 |
ctttcactattatccctcatcatagtactcggtgttttctctccttgggtaggaatgcctcaaaaactcttttttacttcaaaccctgaagtttccaaat |
118 |
Q |
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| T |
38867223 |
ctttcactattatccctcatcatagtactcggtgttttctctccttgggtaggaatgcctcaaaaactcatttttacttcaaaccctgaagtttccaaat |
38867322 |
T |
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| Q |
119 |
ggggtcgttatacattggatgaggcactcacctttgtggctaaaaatgggactgtgattgtttgtattgttagccaaccttatttaccttttcttaataa |
218 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38867323 |
ggggtcgttatacattggatgaagcactcacctttgtggctaaaaatgggactgtgattgtttgtattgttagccaaccttatttaccttttcttaataa |
38867422 |
T |
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| Q |
219 |
ctggttgattagtattgctatgcataagcgtcatgatatggttcttgttattgctgaagattatccttcactttataaagttaatcaactttggcctggt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38867423 |
ctggttgattagtattgctatgcataagcgtcatgatatggttcttgttattgctgaagattatccttcactttataaagttaatcaactttggcctggt |
38867522 |
T |
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| Q |
319 |
catgctgttcttattcctcctatgctt |
345 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
38867523 |
catgctgttcttattcctcctgtgctt |
38867549 |
T |
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