View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11179_low_12 (Length: 347)
Name: NF11179_low_12
Description: NF11179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11179_low_12 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 14178708 - 14179057
Alignment:
| Q |
1 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| | |
|
|
| T |
14178708 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtag |
14178807 |
T |
|
| Q |
101 |
gtctcatag-aaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgt |
199 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
14178808 |
gtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgt |
14178907 |
T |
|
| Q |
200 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatctcttttg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||| |
|
|
| T |
14178908 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttattgctaccgctgcgctgcaagatccagtctcttttg |
14179007 |
T |
|
| Q |
297 |
gattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14179008 |
gattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
14179057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 14173954 - 14174304
Alignment:
| Q |
1 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| | |
|
|
| T |
14173954 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtag |
14174053 |
T |
|
| Q |
101 |
gtctcatag-aaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgt |
199 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
14174054 |
gtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgt |
14174153 |
T |
|
| Q |
200 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatctcttttg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
14174154 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcactaccgctgcgctgcaagatccagtctcttttg |
14174253 |
T |
|
| Q |
297 |
gattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaag |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174254 |
gattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaag |
14174304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 28611916 - 28611566
Alignment:
| Q |
1 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| | |
|
|
| T |
28611916 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtag |
28611817 |
T |
|
| Q |
101 |
gtctcatag-aaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgt |
199 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
28611816 |
gtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgt |
28611717 |
T |
|
| Q |
200 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatctcttttg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||| |
|
|
| T |
28611716 |
cccgtggtttttccctcggtattagagggtttttcacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtctcttttg |
28611617 |
T |
|
| Q |
297 |
gattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaag |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611616 |
gattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaag |
28611566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 28607154 - 28606805
Alignment:
| Q |
1 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| | |
|
|
| T |
28607154 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtag |
28607055 |
T |
|
| Q |
101 |
gtctcatag-aaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgt |
199 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
28607054 |
gtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgt |
28606955 |
T |
|
| Q |
200 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatctcttttg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||| ||||||||||||| ||||||||| |
|
|
| T |
28606954 |
cccgtggtttttccctcggtattagagggtttttcacgttaaatattggtgttaattttttttatcgctaccgctgcgctgcaagatccagtctcttttg |
28606855 |
T |
|
| Q |
297 |
gattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606854 |
gattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
28606805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 44161603 - 44161949
Alignment:
| Q |
1 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| | |
|
|
| T |
44161603 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtag |
44161702 |
T |
|
| Q |
101 |
gtctcatag-aaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgt |
199 |
Q |
| |
|
|||| | | |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
44161703 |
gtcttacgggaaacactatattgtatctcttgtgtgtgtaagagagtggagagaat--tgtaatattctttaatatagtggaatatttttcggagtttgt |
44161800 |
T |
|
| Q |
200 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatctcttttg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
44161801 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccaatctcttttg |
44161900 |
T |
|
| Q |
297 |
gattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161901 |
gattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
44161949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 11104486 - 11104829
Alignment:
| Q |
1 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
11104486 |
gtgttgagtaaatccagagagtgtaggaaaaatacaccgggtggatatcatctctataacttctaggtgttataaaataatagcatttgaataggagtgg |
11104585 |
T |
|
| Q |
101 |
gtctca-tagaaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgt |
199 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||| ||||||||| |||| |||||||| |
|
|
| T |
11104586 |
gtctcacgggaaacactatattgtatctctt-tgtgtgtaagagagtggagagaatattgtaatattcttagatatggtggaatatttttcggagtttgt |
11104684 |
T |
|
| Q |
200 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcannnnnnnngctaccgctgtgctgcaagatccaatctcttttggat |
299 |
Q |
| |
|
||||||| ||| |||||| ||||||||| ||||| | |||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
11104685 |
cccgtgg-tttaccctcgatattagaggattttctatgttaaatattggtgttcatttttatcgctacagctgcgctgcaagatccaatctcttttggat |
11104783 |
T |
|
| Q |
300 |
tttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11104784 |
tttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
11104829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 46 - 346
Target Start/End: Complemental strand, 48827000 - 48826701
Alignment:
| Q |
46 |
tatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatag-aaacactatattgtatctcttgtgtgtgtaagaga |
144 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||| |||||||||| ||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48827000 |
tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgtaagaga |
48826901 |
T |
|
| Q |
145 |
gtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaata |
244 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||| |||| ||| |||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48826900 |
gcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgttaaata |
48826802 |
T |
|
| Q |
245 |
ttggtgttc-annnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaa |
343 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||| ||| |||||| |||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
48826801 |
ttggtgttctttttctatcgctaccgctgcgctgcaagatccaatctc--ttgaattttgaaattttaatttacaattgcgttaagctcgtcgatcccaa |
48826704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 65 - 233
Target Start/End: Complemental strand, 24726454 - 24726288
Alignment:
| Q |
65 |
aggtgttgtaaaataatagcattcgaataggagtgggtctcatagaaa-cactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaat |
163 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| ||||| |||| || |||| |||||||| |||| |||||||| || |||||||||| | || |
|
|
| T |
24726454 |
aggtgttgtaaaataataacatttgaataggagtgg-tctcacggaaaacaatatagtgtatctc--gtgtcggtaagagaatggagagaatattattat |
24726358 |
T |
|
| Q |
164 |
attcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttc |
233 |
Q |
| |
|
||||| |||||| |||||||| |||||||||||||| ||||| |||||||| | ||||||| ||||||| |
|
|
| T |
24726357 |
gttctttaatataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc |
24726288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 149 - 318
Target Start/End: Complemental strand, 48708255 - 48708086
Alignment:
| Q |
149 |
agagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattgg |
248 |
Q |
| |
|
|||||||||||||||||| || |||||| || ||||| ||| ||||||||| ||||||||||| || |||||| || ||||| || |||||||||||| |
|
|
| T |
48708255 |
agagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattgg |
48708156 |
T |
|
| Q |
249 |
tgttcannnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttaca |
318 |
Q |
| |
|
| || | || ||| ||| | || ||||| |||| |||||| ||||||||||||||||||||| |
|
|
| T |
48708155 |
tatttaattttatcgccaccactgcgttgtaagattcaatttcttttatattttggaattttaatttaca |
48708086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 12930693 - 12931042
Alignment:
| Q |
1 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||| | |
|
|
| T |
12930693 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtag |
12930792 |
T |
|
| Q |
101 |
gtctcatag-aaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgt |
199 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
12930793 |
gtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgt |
12930892 |
T |
|
| Q |
200 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca--nnnnnnnngctaccgctgtgctgcaagatccaatctcttttgg |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |
|
|
| T |
12930893 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttgg |
12930992 |
T |
|
| Q |
298 |
attttggaattttaatttacacttgcgttaagctcgtcgagcccaacaag |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930993 |
attttggaattttaatttacacttgcgttaagctcgtcgagcccaacaag |
12931042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 12935439 - 12935786
Alignment:
| Q |
1 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || || ||| | |
|
|
| T |
12935439 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagagtaaaagtag |
12935538 |
T |
|
| Q |
101 |
gtctcatag-aaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgt |
199 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
12935539 |
gtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgt |
12935638 |
T |
|
| Q |
200 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca--nnnnnnnngctaccgctgtgctgcaagatccaatctcttttgg |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | ||||||| |
|
|
| T |
12935639 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtttcttttga |
12935738 |
T |
|
| Q |
298 |
attttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935739 |
attttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
12935786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 26504895 - 26504850
Alignment:
| Q |
292 |
ttttggattttggaattttaatttacacttgcgttaagctcgtcga |
337 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | |||| |||||||| |
|
|
| T |
26504895 |
ttttggattttgaaattttaatttacacttccattaaactcgtcga |
26504850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 252
Target Start/End: Complemental strand, 26505063 - 26504945
Alignment:
| Q |
132 |
tgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttt |
231 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||| || | |||||| |||||| ||| |||||||| | |||| |||| ||| | ||||||| ||| | |
|
|
| T |
26505063 |
tgtgtgaaagagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtgg-ttttgccttgttattagacggtat |
26504965 |
T |
|
| Q |
232 |
tccacgttaaatattggtgtt |
252 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
26504964 |
t-cacgttaaatattgatgtt |
26504945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 34907156 - 34907503
Alignment:
| Q |
1 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||| | |
|
|
| T |
34907156 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtag |
34907255 |
T |
|
| Q |
101 |
gtctcatag-aaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgt |
199 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
34907256 |
gtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgt |
34907355 |
T |
|
| Q |
200 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca--nnnnnnnngctaccgctgtgctgcaagatccaatctcttttgg |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |
|
|
| T |
34907356 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttgg |
34907455 |
T |
|
| Q |
298 |
attttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907456 |
attttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
34907503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 37040774 - 37040426
Alignment:
| Q |
1 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| | |
|
|
| T |
37040774 |
gtgttgagtaaatccagagagtgtgggaaaaatacatcgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtag |
37040675 |
T |
|
| Q |
101 |
gtctcatagaaa-cactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgt |
199 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
37040674 |
gtctcacggaaaacactatattgtatctcttgtgtgtgtgagagagtggagaaaatattgtaatattctttaatatagtggaatatttttcggagtttgt |
37040575 |
T |
|
| Q |
200 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatctcttttg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||| ||||| |
|
|
| T |
37040574 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtcttttttg |
37040475 |
T |
|
| Q |
297 |
gattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37040474 |
gattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
37040426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 15290249 - 15290596
Alignment:
| Q |
1 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgg |
100 |
Q |
| |
|
||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
15290249 |
gtgttgactaaatccagaaagtgtgg-aaaaatacaccgggtgggtatcatctctataacttctaggtgctg--aaataatagcattcgaataggagtgg |
15290345 |
T |
|
| Q |
101 |
gtctcatagaaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtc |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
15290346 |
gtctcacggaaacactatattgtatctcttgtgtgtgtaagagagtggagagaatattgtaatattcttaaatatagtggaaaatcttttggagtttgtc |
15290445 |
T |
|
| Q |
201 |
ccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatctc-ttttg |
296 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| ||||| |
|
|
| T |
15290446 |
ccgtggtttatacctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaaggctgcgctgcaagatccaatctctttttg |
15290545 |
T |
|
| Q |
297 |
gattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaag |
347 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15290546 |
gattttgaaattttaatttacaattgcgttaagctcgtcgagcccaacaag |
15290596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 45 - 345
Target Start/End: Original strand, 12099060 - 12099361
Alignment:
| Q |
45 |
gtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctcttgtgtgtgtaagag |
143 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||| |||| ||||||||||| |||||| ||||||||| ||||||| ||||||||| ||||||||| |
|
|
| T |
12099060 |
gtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtgcgtgtaagag |
12099159 |
T |
|
| Q |
144 |
agtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaat |
243 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| ||| | |||| ||||||||||| |||||||||| ||| ||||||||||||| ||||| |||| |
|
|
| T |
12099160 |
agtggagagaatattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggtttttcacgtaaaat |
12099259 |
T |
|
| Q |
244 |
attggtgttcannnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaa |
343 |
Q |
| |
|
|||| | |||| |||| || || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
12099260 |
attgcttttcatttttatcgctatcggtgagctgcaagatcatatctcttttggattttggaattttaatttacactcgcgttaaactcgtcgagcccaa |
12099359 |
T |
|
| Q |
344 |
ca |
345 |
Q |
| |
|
|| |
|
|
| T |
12099360 |
ca |
12099361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 185
Target Start/End: Original strand, 12082055 - 12082215
Alignment:
| Q |
25 |
gggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcat-agaaacactatattgt |
123 |
Q |
| |
|
|||||||||| | ||||| ||||| |||||||||||||||||| | | |||||||||| |||| ||||||||| | ||||||| |||||||||||||||| |
|
|
| T |
12082055 |
gggaaaaatatatcgggtaggtattatctctataacttctaggcgctataaaataataacatttgaataggagcgagtctcattagaaacactatattgt |
12082154 |
T |
|
| Q |
124 |
atctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatat |
185 |
Q |
| |
|
||||||| | ||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
12082155 |
atctcttttccgtgtaagagagtggagaaaatattgtaatattctt-aatatagtggaatat |
12082215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 90 - 252
Target Start/End: Complemental strand, 2757469 - 2757307
Alignment:
| Q |
90 |
aataggagtgggtctca-tagaaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctt |
188 |
Q |
| |
|
|||||||||| |||||| || |||||||||||||||||||||| ||||| ||||||||| |||||||| || |||||| |||||||||||||||||| || |
|
|
| T |
2757469 |
aataggagtgtgtctcactaaaaacactatattgtatctcttgagtgtgaaagagagtggagagaatagtgcaatatttttaaatatagtggaatat-tt |
2757371 |
T |
|
| Q |
189 |
tcagagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgtt |
252 |
Q |
| |
|
||| | |||||| | |||||||||| | | |||| |||| ||| || ||||||||||||||| |
|
|
| T |
2757370 |
tcaaaatttgtctcatggtttttccttaagcattaaaggggttttcatattaaatattggtgtt |
2757307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 345
Target Start/End: Original strand, 12084669 - 12084751
Alignment:
| Q |
263 |
gctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
345 |
Q |
| |
|
||||||| || ||| ||||||||||| ||| |||||||||| ||||||||||||| || | ||||||||||| |||||||||| |
|
|
| T |
12084669 |
gctaccgttgcgctacaagatccaatgtctattggattttgaaattttaatttaccctcgtgttaagctcgttgagcccaaca |
12084751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 2757273 - 2757211
Alignment:
| Q |
285 |
caatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaag |
347 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| ||||||||| || | ||||||| |
|
|
| T |
2757273 |
caatttcttttgaattttggaattttaatttacacttgtaataagctcgttgaacacaacaag |
2757211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 8539200 - 8539549
Alignment:
| Q |
1 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgg |
100 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
8539200 |
gtgttcagtaaattcagagagtgtgggaaaaatacatcggatgggtatcatctctataacttttaggtgctgtaaaataatagcaatcgaataggagtgg |
8539299 |
T |
|
| Q |
101 |
gtctcatagaaacactata---ttgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagttt |
197 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8539300 |
gtctcacggaaacactataatattgtatctcttgtgtgtgtaagagagtggagataatattgtaatattcttaaatatagtggaatatctttcggagttt |
8539399 |
T |
|
| Q |
198 |
gtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca-nnnnnnnngctaccgctgtgctgcaagatccaatctcttttg |
296 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
8539400 |
gtcccgtgatttttccctcggtattagagggttttccacgttaaatattgatgttcattttttattgttaccgctgcgctgcaagatccaatctctttta |
8539499 |
T |
|
| Q |
297 |
gattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
346 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8539500 |
gaatttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
8539549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 42506060 - 42506169
Alignment:
| Q |
90 |
aataggagtgggtctca-tagaaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctt |
188 |
Q |
| |
|
|||||||| |||||||| |||||||| || |||| ||| ||| |||| |||||||||||| | |||| ||||||||| || |||||||| |||||||| |
|
|
| T |
42506060 |
aataggagcgggtctcactagaaacattaaattgcatcgcttatgtg--taagagagtgaataaaatactgtaatattatttaatatagtaaaatatctt |
42506157 |
T |
|
| Q |
189 |
tcagagtttgtc |
200 |
Q |
| |
|
|| || |||||| |
|
|
| T |
42506158 |
tcggaatttgtc |
42506169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 29107223 - 29106878
Alignment:
| Q |
1 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtggg-tatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| | |||||||||||||| |||||| ||| |
|
|
| T |
29107223 |
gtgttgagtaaatccagagagtgtgggaaaaatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagta |
29107124 |
T |
|
| Q |
100 |
ggtctcatag-aaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttg |
198 |
Q |
| |
|
||||||| | ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||| |
|
|
| T |
29107123 |
ggtctcacgggaaacactat-ttgtatctcttgtgtgtgtaagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttg |
29107025 |
T |
|
| Q |
199 |
tcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcannnnnnnngctaccgctgtgctgcaagatccaatctcttttgga |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
29107024 |
tcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttaacgctaccgctgcgctgcaagatccaatcttttttgga |
29106925 |
T |
|
| Q |
299 |
ttttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
345 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
29106924 |
ttttggaattttaatttacacttgcattaagctcctcgatcccaaca |
29106878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 42911337 - 42910992
Alignment:
| Q |
1 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||| | ||||||||||||||| |||||| ||| | |
|
|
| T |
42911337 |
gtgttgagtaaatccagagagtgtggaaaaaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaatagaagtag |
42911238 |
T |
|
| Q |
101 |
gtctc-atagaaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgt |
199 |
Q |
| |
|
||||| | ||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
42911237 |
gtctcaagggaaacactatattgtatcttttgtgtgtgtgagagagtggagagaatattgtaatattcttaaatatagtggaatat-tttcggagtttgt |
42911139 |
T |
|
| Q |
200 |
cccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcannnnnnnngctaccgctgtgctgcaagatccaatctcttttggat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| | | |||||| ||||||||||| |||||||||||||| |
|
|
| T |
42911138 |
cccgtggtttttccctcggtattagagggttttccatgttaaatattggtgttcatttttatcgttgccgctgcgctgcaagatctaatctcttttggat |
42911039 |
T |
|
| Q |
300 |
tttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
346 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42911038 |
tttaaaattttaatttccacttgcgttaagctcgtcgagcccaacaa |
42910992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 347
Target Start/End: Complemental strand, 38994779 - 38994697
Alignment:
| Q |
265 |
taccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaag |
347 |
Q |
| |
|
|||||||| |||||||||||||| | ||||| |||||||||||||||||||||| || ||||| ||||| ||||||||||| |
|
|
| T |
38994779 |
taccgctgcactgcaagatccaattttgtttgggttttggaattttaatttacactagcattaagatcgtcaagcccaacaag |
38994697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 38997320 - 38997230
Alignment:
| Q |
163 |
tattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttc |
253 |
Q |
| |
|
||||||| |||||| |||| ||| ||| ||||||||||||| ||||||| ||| ||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
38997320 |
tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc |
38997230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 38997193 - 38997136
Alignment:
| Q |
290 |
tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaag |
347 |
Q |
| |
|
||||||||||| |||||||||||||||||| || |||||| | |||| ||||||||| |
|
|
| T |
38997193 |
tcttttggattctggaattttaatttacacccgcattaagcccttcgaacccaacaag |
38997136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 51302181 - 51302306
Alignment:
| Q |
4 |
ttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtc |
103 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | ||||| ||| ||||||||||||||||||||| |
|
|
| T |
51302181 |
ttgagtaaatccagagagtgtggataaaatacaccgggtgggaatcatctctataacttctaggtgctataaaacaattgcattcgaataggagtgggtc |
51302280 |
T |
|
| Q |
104 |
tca-tagaaacactatattgtatctc |
128 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
51302281 |
tcacgggaaacactatattgtatctc |
51302306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 263 - 347
Target Start/End: Original strand, 51302937 - 51303021
Alignment:
| Q |
263 |
gctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaag |
347 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
51302937 |
gctaccgctgcgctgcaagatccaatctgttttggattttgaaattttaatttacacttgcattaagctcgtcgatcccaacaag |
51303021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 51302304 - 51302344
Alignment:
| Q |
214 |
ctcggtattagagggttttccacgttaaatattggtgttca |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51302304 |
ctcggtattagagggttttccacgttaaatattggtgttca |
51302344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 163 - 345
Target Start/End: Complemental strand, 2100379 - 2100199
Alignment:
| Q |
163 |
tattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcannnnnnnn |
262 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||||||| ||||| ||||| ||| ||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
2100379 |
tattctttaatatagtggaatatttttcggagtttgccccgt---ttttcgctcattattaaagggttttccaccttaaatattgatgttcaattttatc |
2100283 |
T |
|
| Q |
263 |
gctaccgctgtgctgcaagatccaa-tctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
345 |
Q |
| |
|
|| || |||||||||| || ||| |||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2100282 |
attatcgttgtgctgcaaaattcaaatctcttatgaattttggaattttaatttacacttgtgttaagctcgtcgagcccaaca |
2100199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 2100771 - 2100724
Alignment:
| Q |
122 |
gtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattctt |
169 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
2100771 |
gtatctcttgtgtatgtaagagagtggagagaatattgtaatattctt |
2100724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University