View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11179_low_14 (Length: 342)
Name: NF11179_low_14
Description: NF11179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11179_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 11016568 - 11016254
Alignment:
| Q |
16 |
gtagtaacataccatatttagcaatagtgtgaacaacaaaaggcaaaacacgaggagcaatatcattagagtaaggatccataggtttagatttagcttc |
115 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11016568 |
gtagtaacataccgtatttagcaatagtatgaacaacaaaaggcaaaacacgaggagcaatatcattagagtaaggatccataggtttagacttagcttc |
11016469 |
T |
|
| Q |
116 |
tttgatcattttaaccatatctctaatatctccaaccatgagtctatatgaatttcctttcagaccttgttgtttgagacgtttctctatcctttttggt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11016468 |
tttgatcattttaaccatatctctaatatctccaaccatgagtctatatgaatttccttttagaccttgttgtttgagacgtttctctatcctttttggt |
11016369 |
T |
|
| Q |
216 |
gtgaaccaaatccaatccagtgcactccaaatccaccatatcaacactgaactaatcacagtgatgattgcaacttttgttggctgcaaatttaatgatg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11016368 |
gtgaaccaaatccaatccagtgcactccaaatccaccatatcaacactgaagtaatcacagtgatgattgcaacttttgttggctgcaaatttaatgatg |
11016269 |
T |
|
| Q |
316 |
ataataatgttccta |
330 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11016268 |
ataataatgttccta |
11016254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University