View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11179_low_16 (Length: 300)
Name: NF11179_low_16
Description: NF11179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11179_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 10040863 - 10040591
Alignment:
| Q |
18 |
aaggtcacgagccatggatctataattctaaccaattaaattgaaaaaacaaaatcaccatctataatggttgtttgtaggcctaatgtccattaccaaa |
117 |
Q |
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| T |
10040863 |
aaggtcacgagccatggatctataattctaaccaataaaattgaaataacaaaatcaccatctataatggttgtttgtaggcctgatatccattaccaaa |
10040764 |
T |
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| Q |
118 |
aacaaagcaaggaannnnnnncttgcattaataatttatgctcatgaaacacaatatcatagtgatccaaaattcaagacaaaataatatatttcatgaa |
217 |
Q |
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| T |
10040763 |
aacaaagcaaggaatttttttcttgcattaataatttatgctcatgaaacacaatatcatagtgattcaaaattcaagacaaaataatatatttcatgaa |
10040664 |
T |
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| Q |
218 |
taaaatcatcttcaagttataaaaattgtatttttccaaagttgtcaaagtaaaacttttcccgacattcatc |
290 |
Q |
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| T |
10040663 |
taaaatcatcttcaagttataaaaattgtatttttccaaagttgtcaaagtaaaacttttcccgacattcatc |
10040591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 20245494 - 20245756
Alignment:
| Q |
16 |
ctaaggtcacgagccatggatctataattctaaccaattaaattgaaaaaacaaaatcaccatctataatggttgtttgtaggcctaatgtccattacca |
115 |
Q |
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| T |
20245494 |
ctaacgtcatgagccatggatctataattctaaccaataaaattgaaaaaa----atcaccatatataaaggttgt----aggcctaatgtccattacca |
20245585 |
T |
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| Q |
116 |
aaaacaaagcaaggaannnnnnn-----cttgcattaataatttatgctcatgaaacacaatatcatagtgatccaaaattcaagacaaaataatatatt |
210 |
Q |
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| T |
20245586 |
aaaaaaaacctaggaacttttttttttgcttgcattaataatttatgctcatgaaacataatatcatagtgatccaaaattcaagacaaaataaaatctt |
20245685 |
T |
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| Q |
211 |
tcatgaataaaatcatcttcaagttat-aaaaattgtatttttccaaagttgtca-aagtaaaacttttcc |
279 |
Q |
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| T |
20245686 |
tcatgaataaaatcatcatcaagttataaaaaattgtaattttccaaagttgtcataagtaaaacttttcc |
20245756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 29 - 290
Target Start/End: Original strand, 20287179 - 20287434
Alignment:
| Q |
29 |
ccatggatctataattctaaccaattaaattgaaaaaacaaaatcaccatctataatggttgtttgtaggcctaatgtccattaccaaaaacaaagcaag |
128 |
Q |
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| T |
20287179 |
ccatggatctaaaattctaaccaatataatttaaaaaa----atcaccatctataaaggttgc----aggcctattgtccattaccaaaaacaaagcaag |
20287270 |
T |
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| Q |
129 |
gaannnnnnn--cttgcattaataatttatgctcatgaaacacaatatcatagtgatccaaaattcaagacaaaataatatatttcatgaataaaatcat |
226 |
Q |
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||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||| |||| ||| |
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| T |
20287271 |
gaatttttttttcttgcattaataatttatgctcatgaaacataatatcatagtgattcaaaattcaagacaaaataaaatctttcatgaa-aaaaacat |
20287369 |
T |
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| Q |
227 |
cttcaagttat-aaaaattgtatttttccaaagttgtc-aaagtaaaacttttcccgacattcatc |
290 |
Q |
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||| ||||||| |||||||||| ||||||||||||||| |||||||||||||||| || ||||||| |
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| T |
20287370 |
ctttaagttataaaaaattgta-ttttccaaagttgtcaaaagtaaaacttttcctgagattcatc |
20287434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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