View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11179_low_18 (Length: 284)
Name: NF11179_low_18
Description: NF11179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11179_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 26315980 - 26315714
Alignment:
| Q |
11 |
ttttgaattgtatcctttctttacgtgcnnnnnnn-gcatgtcttgtgctacgtattgtagtataataaattcttggttttctcaaaaacaaacaaaata |
109 |
Q |
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| T |
26315980 |
ttttgaattgtatcctttctttacgtgcttatatttgcatgtcttgtgctacgtattgcagtataataaattcttggtttttttaaaaacaaacaaaata |
26315881 |
T |
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| Q |
110 |
tttctctgtcaccat--tatggctattattgtagtggttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattag |
207 |
Q |
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| T |
26315880 |
tttctttgtcaccatattatggctagtattgtagtggttttcgactttgacaaaaccattattgaatgtgacagcgataactgggttgttgatgaattag |
26315781 |
T |
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| Q |
208 |
gtttcaatgatttgttcaatcaactctttcccatcatgccattgaactatctcatggtaagcctttg |
274 |
Q |
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| T |
26315780 |
gtttcaatgatttgttcaatcaactctttcccaccatgccattgaactatctcatggtaagcctttg |
26315714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 123 - 268
Target Start/End: Complemental strand, 43110973 - 43110828
Alignment:
| Q |
123 |
attatggctattattgtagtggttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgt |
222 |
Q |
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| T |
43110973 |
attatggctaatattgttgtggtttttgactttgacaaaaccatagttgaatgtgacagtgataactgggttgttgatgaattgggtttcactgatttgt |
43110874 |
T |
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| Q |
223 |
tcaatcaactctttcccatcatgccattgaactatctcatggtaag |
268 |
Q |
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| T |
43110873 |
tcaatgaacttgttcccaccatgccatggaacaatctcatggtaag |
43110828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 266
Target Start/End: Original strand, 5268904 - 5269026
Alignment:
| Q |
144 |
gttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcccatca |
243 |
Q |
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| T |
5268904 |
gttttcgacttcgataaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaactccttcccacta |
5269003 |
T |
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| Q |
244 |
tgccattgaactatctcatggta |
266 |
Q |
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| T |
5269004 |
tgcctttcaattctctcatggta |
5269026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 5249659 - 5249791
Alignment:
| Q |
134 |
tattgtagtggttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactc |
233 |
Q |
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| T |
5249659 |
tattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctc |
5249758 |
T |
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| Q |
234 |
tttcccatcatgccattgaactatctcatggta |
266 |
Q |
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| T |
5249759 |
cttcccactatgccttggaattctctcatggta |
5249791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 5276850 - 5276756
Alignment:
| Q |
144 |
gttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcc |
238 |
Q |
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| T |
5276850 |
gtttttgattttgacaaaacgatcattgattgtgacagtgataattggttgattgatgaattgggtttcactgatttgttcaatcaactccttcc |
5276756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 240
Target Start/End: Complemental strand, 5272878 - 5272783
Alignment:
| Q |
145 |
ttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttccca |
240 |
Q |
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| T |
5272878 |
tttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttccca |
5272783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 19569168 - 19569227
Alignment:
| Q |
174 |
tgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactc |
233 |
Q |
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| T |
19569168 |
tgtgatagtgataattgggatgttgatgaattaggtttcatcgatttgttcaatcaactc |
19569227 |
T |
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