View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11179_low_19 (Length: 258)
Name: NF11179_low_19
Description: NF11179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11179_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 5207135 - 5206883
Alignment:
| Q |
1 |
aggagggtgaagattgtttcaagggttatgcttctgcgtataaatatagtcggtatgagcaacaagtgtcctcctcatcaagcattcctcctcttctatt |
100 |
Q |
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| T |
5207135 |
aggagggtgaagattgtttcaagggttatgcttctgcgtataaatatagtcggtatgagcaacaagtgtcctcctcatcaagcattcctcctcttctatt |
5207036 |
T |
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| Q |
101 |
tcttcacaaattttatcaactgcatcaacatcctatatgaaatgtagatggaaaaatacacttgttaagcatcaatagaagacatgaaaaagatgtatnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5207035 |
tcttcacaaattttatcaactgcatcaacatcctatatgaaatgtagatggaaaaatacacttgttaagcatcaatagaagacatgaaaaagatgtataa |
5206936 |
T |
|
| Q |
201 |
nnnnnttaacaacaaatgaataacagcatcaacaaaccagattctgtgctgct |
253 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
5206935 |
aaaaattaacaacaaatgaataacagcatcaacaaaccagtttctgtgttgct |
5206883 |
T |
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