View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11179_low_2 (Length: 620)

Name: NF11179_low_2
Description: NF11179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11179_low_2
NF11179_low_2
[»] chr8 (16 HSPs)
chr8 (393-603)||(30935738-30935952)
chr8 (95-286)||(30935953-30936145)
chr8 (95-257)||(2743911-2744074)
chr8 (95-256)||(4125024-4125186)
chr8 (75-250)||(19715704-19715882)
chr8 (109-222)||(15682943-15683056)
chr8 (95-244)||(13468745-13468895)
chr8 (111-258)||(12958101-12958249)
chr8 (111-257)||(36994516-36994663)
chr8 (157-245)||(35206990-35207079)
chr8 (111-222)||(30056017-30056128)
chr8 (144-201)||(8878144-8878201)
chr8 (95-182)||(7839253-7839340)
chr8 (136-199)||(28377695-28377758)
chr8 (136-223)||(40900768-40900854)
chr8 (150-254)||(4321559-4321664)
[»] chr4 (22 HSPs)
chr4 (11-258)||(51853675-51853916)
chr4 (95-253)||(38766071-38766230)
chr4 (111-256)||(14854584-14854730)
chr4 (95-257)||(31307066-31307229)
chr4 (111-257)||(13686579-13686727)
chr4 (96-257)||(35972321-35972483)
chr4 (97-257)||(45994500-45994661)
chr4 (111-201)||(13948608-13948698)
chr4 (95-254)||(35334098-35334259)
chr4 (111-254)||(7096077-7096221)
chr4 (89-203)||(46016182-46016296)
chr4 (95-205)||(51626306-51626416)
chr4 (95-203)||(9012303-9012411)
chr4 (153-256)||(11140436-11140540)
chr4 (147-199)||(17135133-17135185)
chr4 (150-253)||(22189443-22189547)
chr4 (112-222)||(14042843-14042953)
chr4 (208-257)||(25768765-25768815)
chr4 (147-215)||(4710010-4710079)
chr4 (136-256)||(38844209-38844330)
chr4 (139-199)||(29597510-29597570)
chr4 (136-200)||(47023438-47023502)
[»] chr7 (20 HSPs)
chr7 (111-256)||(8839297-8839443)
chr7 (111-257)||(13254117-13254264)
chr7 (95-256)||(29059784-29059946)
chr7 (95-258)||(19477250-19477413)
chr7 (150-257)||(28537368-28537476)
chr7 (95-258)||(20207475-20207638)
chr7 (95-241)||(31492097-31492244)
chr7 (111-256)||(46373652-46373798)
chr7 (111-256)||(21747056-21747201)
chr7 (150-254)||(2657891-2657996)
chr7 (147-262)||(7265365-7265481)
chr7 (149-252)||(24579506-24579610)
chr7 (136-257)||(40099313-40099435)
chr7 (111-222)||(28828781-28828892)
chr7 (151-254)||(7190415-7190519)
chr7 (142-204)||(4059740-4059802)
chr7 (104-222)||(27484058-27484176)
chr7 (192-257)||(32469908-32469974)
chr7 (147-252)||(40211936-40212042)
chr7 (147-199)||(31717917-31717969)
[»] chr5 (11 HSPs)
chr5 (95-244)||(31113325-31113475)
chr5 (111-256)||(10591906-10592052)
chr5 (95-257)||(30784986-30785149)
chr5 (136-256)||(2798356-2798476)
chr5 (111-253)||(18909317-18909457)
chr5 (136-256)||(2804523-2804643)
chr5 (95-195)||(5123498-5123598)
chr5 (178-257)||(28023526-28023606)
chr5 (112-169)||(36212963-36213020)
chr5 (111-170)||(29553605-29553664)
chr5 (151-240)||(12682630-12682720)
[»] chr3 (11 HSPs)
chr3 (95-256)||(48204311-48204473)
chr3 (97-261)||(25224673-25224838)
chr3 (95-256)||(30995965-30996127)
chr3 (95-256)||(27763702-27763862)
chr3 (151-258)||(38088612-38088720)
chr3 (147-261)||(21465857-21465972)
chr3 (97-222)||(48210962-48211087)
chr3 (95-169)||(1642673-1642747)
chr3 (136-258)||(14352531-14352658)
chr3 (151-254)||(22288216-22288320)
chr3 (111-199)||(55123134-55123222)
[»] chr1 (28 HSPs)
chr1 (95-256)||(16756061-16756223)
chr1 (97-259)||(10840993-10841157)
chr1 (111-222)||(25655280-25655391)
chr1 (136-200)||(24801417-24801481)
chr1 (151-257)||(22022098-22022205)
chr1 (74-170)||(42297420-42297517)
chr1 (147-222)||(32883622-32883697)
chr1 (136-257)||(28724651-28724772)
chr1 (98-199)||(9780992-9781093)
chr1 (158-257)||(17600561-17600661)
chr1 (138-202)||(31733734-31733798)
chr1 (147-246)||(40019230-40019330)
chr1 (147-257)||(36982333-36982444)
chr1 (150-256)||(45806215-45806322)
chr1 (109-219)||(35539994-35540104)
chr1 (95-200)||(7242807-7242912)
chr1 (111-223)||(46864104-46864216)
chr1 (147-253)||(35692467-35692574)
chr1 (136-199)||(36522277-36522340)
chr1 (175-261)||(7624849-7624935)
chr1 (111-200)||(12035585-12035675)
chr1 (120-257)||(32534061-32534198)
chr1 (111-219)||(18428158-18428265)
chr1 (111-198)||(36806649-36806736)
chr1 (95-165)||(15642526-15642596)
chr1 (125-171)||(33721005-33721051)
chr1 (156-244)||(29124736-29124825)
chr1 (147-219)||(16552518-16552590)
[»] chr2 (18 HSPs)
chr2 (136-258)||(12133271-12133394)
chr2 (95-261)||(31579229-31579396)
chr2 (97-257)||(5394375-5394535)
chr2 (153-256)||(37568785-37568889)
chr2 (149-256)||(42745170-42745278)
chr2 (150-256)||(44732628-44732735)
chr2 (89-253)||(993736-993900)
chr2 (111-252)||(18105378-18105520)
chr2 (108-257)||(33756955-33757105)
chr2 (150-254)||(7157479-7157584)
chr2 (120-254)||(39401094-39401229)
chr2 (173-256)||(28365928-28366012)
chr2 (94-182)||(38743792-38743880)
chr2 (125-216)||(35476193-35476284)
chr2 (136-195)||(39314487-39314546)
chr2 (147-256)||(24359544-24359653)
chr2 (173-215)||(25988641-25988683)
chr2 (150-257)||(44752249-44752357)
[»] chr6 (16 HSPs)
chr6 (149-257)||(21910183-21910292)
chr6 (111-206)||(12836913-12837008)
chr6 (136-254)||(31107534-31107653)
chr6 (111-257)||(12411126-12411273)
chr6 (142-219)||(31489532-31489609)
chr6 (111-253)||(423637-423780)
chr6 (124-223)||(29185306-29185405)
chr6 (111-253)||(278374-278516)
chr6 (150-256)||(25084013-25084120)
chr6 (136-203)||(28099276-28099343)
chr6 (136-195)||(28933179-28933238)
chr6 (159-261)||(33792945-33793048)
chr6 (131-256)||(5944821-5944947)
chr6 (89-159)||(9536844-9536914)
chr6 (104-182)||(17177192-17177270)
chr6 (148-197)||(24448203-24448252)
[»] scaffold0182 (1 HSPs)
scaffold0182 (95-222)||(26345-26472)
[»] scaffold0020 (1 HSPs)
scaffold0020 (173-256)||(167834-167916)
[»] scaffold0009 (1 HSPs)
scaffold0009 (111-166)||(27241-27296)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 6e-88; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 393 - 603
Target Start/End: Complemental strand, 30935952 - 30935738
Alignment:
Q  393 ctaagcaactattacaaattttgcagtaacatacataatttataaaattgatta---aaataaaaatgtgaatttaa-ctatttaaactatgaataaata 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||  |||||| |||| |||| ||||||||||||    
T  30935952 ctaagcaactattacaaattttgcagtaacatacataatttataaaattgattagtaaaataaaaatgttgatttaagctatgtaaattatgaataaata 30935853  T
Q  489 cataatttataattcacacgaccaaacaacacattttaaccaagcactttgaagtttataaatagtaagataatgctttttaagtcaatgtgggactata 588  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30935852 cataatttataattcacacaaccaaacaacacattttaaccaagcactttgaagtttataaatagtaagataatgctttttaagtcgatgtgggactata 30935753  T
Q  589 tctggtgcccatttt 603  Q
    ||| |||||||||||    
T  30935752 tctagtgcccatttt 30935738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 95 - 286
Target Start/End: Complemental strand, 30936145 - 30935953
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | |||||||| || ||||||  || | |||||| ||| |  |||||||||||||||||||||  ||||||||| |||||||| |||    
T  30936145 gcgcaactgcggagactaatccctcgaacattgtcggacccaaatgggcggcaggctctccctaagagttttaacgttgctgcatgcttaaggctggatt 30936046  T
Q  195 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggtatattatattattcataacttaagtaactt 286  Q
    ||||| ||| | |||| ||||| ||||| |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30936045 cgaactcaggaccttggttaagttagaagagacccgttccatctcatctaagtgctcttgggtatattatattattcataacttaagtaactt 30935953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 95 - 257
Target Start/End: Complemental strand, 2744074 - 2743911
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | |||||||| |||||||||| || | |||||||||  |  ||||||||||||||||||||   |||||||||| ||||||| |||    
T  2744074 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactgctgcatgcccaaggctggatt 2743975  T
Q  195 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 257  Q
    ||||||||| | |||| ||||||||||| |||||| || ||||||||||||  |||||||||||    
T  2743974 cgaacccaggaccttggttaagctagaagagacccgttccatctcatctaaatgctcttgggta 2743911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 95 - 256
Target Start/End: Original strand, 4125024 - 4125186
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | |||||||| |||||||||| || | |||||| ||| |  ||||||||||||||||||||   |||||||||| ||||||  |||    
T  4125024 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacagtgctgcatgcccaaggcttgatt 4125123  T
Q  195 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 256  Q
    ||||||||| |  ||| ||||||||||| |||||| || ||||||||||||| ||||||||||    
T  4125124 cgaacccaggacattggttaagctagaagagacccgttccatctcatctaagtgctcttgggt 4125186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 75 - 250
Target Start/End: Original strand, 19715704 - 19715882
Alignment:
Q  75 tgtaaacgaggtat-ctccaagcgcaactccggaaattaatccctt-gagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaa 172  Q
    ||||||| |||||| ||||  |||||||| |||| | ||||||| | |||||||||| || | |||||| ||| || |||||||| ||||||||||||      
T  19715704 tgtaaaccaggtattctccgcgcgcaactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaagctctccctgagagttttaacgct 19715803  T
Q  173 gctgcatgcctaaggctgaattcgaacccagaatcttgattaagctag-aaagacccatttcatctcatctaagcgctc 250  Q
    |||||||||| ||||||| |||||||||||| | |||| ||||||||| ||||||   || ||||||||||||||||||    
T  19715804 gctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaaagacatgttccatctcatctaagcgctc 19715882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 15683056 - 15682943
Alignment:
Q  109 attaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatct 208  Q
    |||||||||| |||||||||| || | |||||| ||| |  |||||||||||||||||||||  |||||||||| ||||||| |||||||| ||| | ||    
T  15683056 attaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggacct 15682957  T
Q  209 tgattaagctagaa 222  Q
    ||||||||||||||    
T  15682956 tgattaagctagaa 15682943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 95 - 244
Target Start/End: Original strand, 13468745 - 13468895
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | |||||| | |||||||||| ||   |||||| ||| | |||||| |||||||||||||||  ||| |||||| ||||||| |||    
T  13468745 gcgcaactgcggagactaatccttcgagcattgtgggactcaaatgggcggcagactctctctaagagttttaacgctgctacatgcccaaggctggatt 13468844  T
Q  195 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaa 244  Q
    ||||||||| | |||| ||||||||||| |||||| || ||||| ||||||    
T  13468845 cgaacccaggaccttggttaagctagaagagacccgttccatctaatctaa 13468895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 258
Target Start/End: Original strand, 12958101 - 12958249
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    |||||||| |||||||||| || | |||||| ||  |  |||||||||||||||||||||  |||||||||| || |||| |||| ||||||  | ||||    
T  12958101 taatccctcgagcattgtgggacccaaatgggcgacaggctctccctaagagttttaacgctgctgcatgcccaatgctggattcaaacccatgaccttg 12958200  T
Q  211 attaagctagaa-agacccatttcatctcatctaagcgctcttgggtat 258  Q
     ||||||||||| ||||   || |||||||||||||| |||||||||||    
T  12958201 gttaagctagaagagactagttccatctcatctaagcactcttgggtat 12958249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 257
Target Start/End: Original strand, 36994516 - 36994663
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    |||||||| |||| ||||| || | |||||| | | ||||||||| ||||||||||||||  |||||||| | ||||||| |||||||||||| | ||||    
T  36994516 taatccctcgagccttgtgggacccaaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaaggctggattcgaacccaggaccttg 36994615  T
Q  211 attaagctagaa-agacccatttcatctcatctaagcgctcttgggta 257  Q
     |||| |||||| ||||   |  ||||| |||||||||||||||||||    
T  36994616 gttaaactagaagagacatgtgccatcttatctaagcgctcttgggta 36994663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 35207079 - 35206990
Alignment:
Q  157 taagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaag 245  Q
    ||||||||||||||  |||||||| | |||| | |||||||||||||||||||| ||||| ||||| |||||  ||||||||||||||||    
T  35207079 taagagttttaacgctgctgcatgtccaaggttaaattcgaacccagaatcttggttaagttagaagagacctgtttcatctcatctaag 35206990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 30056017 - 30056128
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    |||||||| ||||||||||  | | |||||||||| |  ||||||||||||||||||| |  |||||||||||||||||| ||| |||||||  | |||     
T  30056017 taatccctcgagcattgtggaacccaaatggacggcaggctctccctaagagttttaatgctgctgcatgcctaaggctggatttgaacccatgaccttc 30056116  T
Q  211 attaagctagaa 222  Q
     |||||||||||    
T  30056117 gttaagctagaa 30056128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 8878144 - 8878201
Alignment:
Q  144 ggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaaccc 201  Q
    |||||||||| ||||||||||||||||  | ||||||||||| |||| ||||||||||    
T  8878144 ggtaaactcttcctaagagttttaacgttgttgcatgcctaaagctggattcgaaccc 8878201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 7839253 - 7839340
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcc 182  Q
    |||||||| |||| | |||||||| |||||||||| || | |||||| ||| |  ||||||||||||||||||| |  ||||||||||    
T  7839253 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcatgctctccctaagagttttaaagctgctgcatgcc 7839340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 28377758 - 28377695
Alignment:
Q  136 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaac 199  Q
    |||| ||||| ||||||||||||||| |||||| |  ||||||||||||| |||| ||||||||    
T  28377758 aaatagacggcaaactctccctaagaattttaatgttgctgcatgcctaatgctggattcgaac 28377695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 40900854 - 40900768
Alignment:
Q  136 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaaa 223  Q
    |||||||||| |||  |||| ||||||||||||| | | || ||| ||||||| |||||||||||||  | |||||||||||||||||    
T  40900854 aaatggacggaaaaaactccttaagagttttaaccatgttgtatgtctaaggccgaattcgaacccatga-cttgattaagctagaaa 40900768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 254
Target Start/End: Original strand, 4321559 - 4321664
Alignment:
Q  150 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 248  Q
    |||||||||||||||||||||    |||||| ||||| ||| |||| ||||||||| |||  ||||||||||| | | | || ||||||||||||| | |    
T  4321559 ctctccctaagagttttaacgttattgcatgtctaagactggattcaaacccagaaccttacttaagctagaagaaatctatgtcatctcatctaaaccc 4321658  T
Q  249 tcttgg 254  Q
    ||||||    
T  4321659 tcttgg 4321664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 51853916 - 51853675
Alignment:
Q  11 cacagagagttaggtgaagctgagctacactcaccaacaactgacnnnnnnnnngtttgtttgttgtaaacgaggtatc-tccaagcgcaactccggaaa 109  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||          |||||||||||| ||| ||||||| ||| |||||     |||| |    
T  51853916 cacagagagttaggtgaagctaagctacagtcaccaacaactgactttctcttt-tttgtttgttgtgaacaaggtatcctccgagcgc-----cggaga 51853823  T
Q  110 ttaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatctt 209  Q
     |||||||| ||| ||||||||| |||||||||| | ||||| ||| |||||||||||| ||||||||||||| ||||||||||||||| ||||||  ||    
T  51853822 ctaatccctcgagtattgtgagaccaaaatggaccgcaaactttcc-taagagttttaaggaagctgcatgcccaaggctgaattcgaa-ccagaacttt 51853725  T
Q  210 gattaagctagaa-agacccatttcatctcatctaagcgctcttgggtat 258  Q
    | ||||| ||||| |||| ||||  |||||||||||||||||||||||||    
T  51853724 ggttaagttagaagagactcattctatctcatctaagcgctcttgggtat 51853675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 95 - 253
Target Start/End: Complemental strand, 38766230 - 38766071
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | |||||||| ||||||||||||| | |||||| ||| | ||||||||||||||||||||||  |||||||||| ||||||| |||    
T  38766230 gcgcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccctaagagttttaacgctgctgcatgcccaaggctggatt 38766131  T
Q  195 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttg 253  Q
    | ||||||| | |||| ||||||||||| |||| | || |||||||||||||||||||||    
T  38766130 caaacccaggaccttggttaagctagaagagactcgttccatctcatctaagcgctcttg 38766071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 111 - 256
Target Start/End: Complemental strand, 14854730 - 14854584
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    |||||||| ||| |||||  || | |||||| ||| || |||||||||||||||||||||| |||||||||| ||||||| |||||||||||||| ||||    
T  14854730 taatccctcgagaattgttggacccaaatgggcggcaagctctccctaagagttttaacgatgctgcatgcccaaggctggattcgaacccagaaccttg 14854631  T
Q  211 attaagctagaa-agacccatttcatctcatctaagcgctcttgggt 256  Q
     ||||||||||| ||| || || ||||||||||||||||||||||||    
T  14854630 gttaagctagaagagaaccgttccatctcatctaagcgctcttgggt 14854584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 95 - 257
Target Start/End: Original strand, 31307066 - 31307229
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | |||||||| |||||||||| || | |||||| ||| |  ||||||||||||||||||||   |||||||||| ||||||| |||    
T  31307066 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggatt 31307165  T
Q  195 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 257  Q
    ||||||||| | |||| ||||||||||| |||||| || ||||||||||||| |||||||||||    
T  31307166 cgaacccaggaccttggttaagctagaagagacccgttccatctcatctaagtgctcttgggta 31307229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 111 - 257
Target Start/End: Complemental strand, 13686727 - 13686579
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccct-aagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatctt 209  Q
    ||||| || |||| |||||||| | |||||||||| ||||||||||| |||||||||||||  |||||| ||| |||| || |||||||||||| | |||    
T  13686727 taatctctcgagccttgtgagacccaaatggacggcaaactctcccttaagagttttaacgctgctgcacgcccaaggatggattcgaacccaggacctt 13686628  T
Q  210 gattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 257  Q
    | |||||| |||| ||||||||  |||||||||||||||||||||||||    
T  13686627 ggttaagcaagaagagacccatgccatctcatctaagcgctcttgggta 13686579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 96 - 257
Target Start/End: Complemental strand, 35972483 - 35972321
Alignment:
Q  96 cgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattc 195  Q
    ||||||| |||| | |||||||| || ||| ||| || | |||||| ||| ||||||||||||| ||||||||||  |||| ||||| | ||||| ||||    
T  35972483 cgcaactgcggagactaatccctcgaacatagtgggacccaaatgggcggcaaactctccctaatagttttaacgctgctgtatgcccatggctggattc 35972384  T
Q  196 gaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 257  Q
    |||||||  | |||| ||||||||||| || ||| || |||||||||||||||||||||||||    
T  35972383 gaacccaagaccttggttaagctagaagaggcccgttccatctcatctaagcgctcttgggta 35972321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 97 - 257
Target Start/End: Complemental strand, 45994661 - 45994500
Alignment:
Q  97 gcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcg 196  Q
    |||||| |||| | ||||| || ||||||||||||| | |||||| ||  |  |||||||||||||||||||||  | |||||||| ||||||| |||||    
T  45994661 gcaactgcggagactaatctctcgagcattgtgagacccaaatgggcgtcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcg 45994562  T
Q  197 aacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 257  Q
    || |||| | |||| ||||||||||| |||||  || |||||||||||| ||||||||||||    
T  45994561 aatccaggaccttggttaagctagaagagacctgttccatctcatctaaacgctcttgggta 45994500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 111 - 201
Target Start/End: Original strand, 13948608 - 13948698
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaaccc 201  Q
    |||||||| ||||||||||||||  |||||||||||| |||||||||||||||||||||   ||||||| || ||||||| ||||||||||    
T  13948608 taatccctcgagcattgtgagattcaaatggacggtagactctccctaagagttttaacactgctgcatacccaaggctggattcgaaccc 13948698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 95 - 254
Target Start/End: Original strand, 35334098 - 35334259
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | |||||||| ||| |||||| || | |||||| |||   |||||| ||||||||||||||   |||||||||| ||||||||||     
T  35334098 gcgcaactgcggagactaatccctcgagtattgtgggacccaaatgggcggcggactctctctaagagttttaactctgctgcatgcccaaggctgaata 35334197  T
Q  195 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatct-aagcgctcttgg 254  Q
    |||||| |||| |||| ||||||||||| ||||   || |||||||||| ||||||||||||    
T  35334198 cgaaccaagaaccttggttaagctagaagagacttgttccatctcatctaaagcgctcttgg 35334259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 254
Target Start/End: Complemental strand, 7096221 - 7096077
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    ||||| |||||||||||| ||| | |||||| |||||| ||||||||||||||||||||   ||||||| |  ||| ||| |||| |||||| || ||||    
T  7096221 taatctcttgagcattgtaagacctaaatgggcggtaagctctccctaagagttttaactttgctgcatactcaagactgtattcaaacccaaaaccttg 7096122  T
Q  211 attaagctagaa-agacccatttcatctcatctaagcgctcttgg 254  Q
     ||||||||||| | |||  | |||||||||||||||| ||||||    
T  7096121 gttaagctagaagaaacctgtgtcatctcatctaagcgttcttgg 7096077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 46016296 - 46016182
Alignment:
Q  89 ctccaagcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggc 188  Q
    ||||| |||||||| |||| | |||| | | |||||||||| || | |||||| ||| |  ||||||||||||||||||||   |||||||||| |||||    
T  46016296 ctccacgcgcaactacggagactaattcttcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggc 46016197  T
Q  189 tgaattcgaacccag 203  Q
    || ||||||||||||    
T  46016196 tggattcgaacccag 46016182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 51626306 - 51626416
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | ||||| || ||||| |||| || | |||||||||| | ||||||||||| |||||||||   |||||||||| ||||||| |||    
T  51626306 gcgcaactgcggagactaatctctcgagcactgtgggacccaaatggacggcagactctccctaaaagttttaacactgctgcatgcccaaggctggatt 51626405  T
Q  195 cgaacccagaa 205  Q
    ||||| |||||    
T  51626406 cgaactcagaa 51626416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 203
Target Start/End: Complemental strand, 9012411 - 9012303
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | |||||||| |||||||||| || | || ||| ||| || |||||||||||||||| |||   |||||||||| ||||||  |||    
T  9012411 gcgcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccctaagagtttgaacactgctgcatgcccaaggctagatt 9012312  T
Q  195 cgaacccag 203  Q
    |||||||||    
T  9012311 cgaacccag 9012303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 11140540 - 11140436
Alignment:
Q  153 tccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctct 251  Q
    |||||||||||||||| |  |||||||||| ||||||| ||||||| |||| | |||| ||||||||||| | | || | | |||| |||||||||||||    
T  11140540 tccctaagagttttaaagctgctgcatgcccaaggctggattcgaaaccaggaccttggttaagctagaagatagccgtgttatcttatctaagcgctct 11140441  T
Q  252 tgggt 256  Q
    |||||    
T  11140440 tgggt 11140436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 17135185 - 17135133
Alignment:
Q  147 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaac 199  Q
    ||||||||||||||||||||||||  |||||||||  ||||||| ||||||||    
T  17135185 aaactctccctaagagttttaacgctgctgcatgcacaaggctggattcgaac 17135133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 253
Target Start/End: Original strand, 22189443 - 22189547
Alignment:
Q  150 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 248  Q
    |||| |||||||||||||| |  |||||||||  |||| || |||||||| | | | |||| ||||||||||| |||| ||| |||||||||||||| ||    
T  22189443 ctctacctaagagttttaatgttgctgcatgcacaaggttggattcgaactctggaccttggttaagctagaagagactcatgtcatctcatctaagtgc 22189542  T
Q  249 tcttg 253  Q
    |||||    
T  22189543 tcttg 22189547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 14042953 - 14042843
Alignment:
Q  112 aatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttga 211  Q
    ||||||||||||||||||  ||| |||||||||  |   |||||| |||||||| ||||  |||||||||| ||| ||  ||||||||||||||  |||     
T  14042953 aatcccttgagcattgtggaatccaaatggacgacatgttctccccaagagtttaaacgcggctgcatgcccaagacttgattcgaacccagaacgttgg 14042854  T
Q  212 ttaagctagaa 222  Q
    ||||| |||||    
T  14042853 ttaagttagaa 14042843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 25768765 - 25768815
Alignment:
Q  208 ttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 257  Q
    |||||||| |||||| |||||| || |||||||||||||||||||||||||    
T  25768765 ttgattaaactagaagagacccgttccatctcatctaagcgctcttgggta 25768815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 4710010 - 4710079
Alignment:
Q  147 aaactctccctaagagttttaacgaagctgcatgcctaaggct-gaattcgaacccagaatcttgattaa 215  Q
    |||||||| |||||||||||||||  | ||||||||||| ||| || |||||||||| || |||||||||    
T  4710010 aaactctctctaagagttttaacgttgttgcatgcctaatgctagatttcgaacccaaaaccttgattaa 4710079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 256
Target Start/End: Original strand, 38844209 - 38844330
Alignment:
Q  136 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttca 234  Q
    |||||| ||| | ||||| ||||||||||||||||  | |||||||| || |||| |||||||| ||  | |||| ||||||||||| |||| | || ||    
T  38844209 aaatgggcggcagactcttcctaagagttttaacgctgttgcatgcccaaagctggattcgaactcatgaccttggttaagctagaagagactcgttcca 38844308  T
Q  235 tctcatctaagcgctcttgggt 256  Q
    |||||| ||||| || ||||||    
T  38844309 tctcatttaagcacttttgggt 38844330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 29597570 - 29597510
Alignment:
Q  139 tggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaac 199  Q
    ||||| |||||||||| |||||||||||||||  | |||||||| ||| ||||||| ||||    
T  29597570 tggacagtaaactctctctaagagttttaacgttgttgcatgcccaagactgaatttgaac 29597510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 47023502 - 47023438
Alignment:
Q  136 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacc 200  Q
    |||||||||  |||||||||||||||||||||||   | |||||||||||| ||| ||| |||||    
T  47023502 aaatggacgacaaactctccctaagagttttaactttgttgcatgcctaagtctggattggaacc 47023438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 8e-32; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 111 - 256
Target Start/End: Original strand, 8839297 - 8839443
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    |||||||| ||| |||||| |||| |||| | ||| | | ||||||||||||||||||||  |||||||||| ||||||| |||||||||||| | ||||    
T  8839297 taatccctcgagtattgtgggatctaaataggcggcagattctccctaagagttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttg 8839396  T
Q  211 attaagctagaa-agacccatttcatctcatctaagcgctcttgggt 256  Q
     ||||||||||| |||||| |||||||||||||||||||||||||||    
T  8839397 gttaagctagaagagacccgtttcatctcatctaagcgctcttgggt 8839443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 111 - 257
Target Start/End: Original strand, 13254117 - 13254264
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    |||||||| |||||||||| || | |||||| ||| |  |||||||||||||||| ||||  |||||||||||||||||| |||||||| ||| | ||||    
T  13254117 taatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttg 13254216  T
Q  211 attaagctagaa-agacccatttcatctcatctaagcgctcttgggta 257  Q
     ||||||||||| |||||| || |||||||||||||||||||||||||    
T  13254217 gttaagctagaagagacccgttccatctcatctaagcgctcttgggta 13254264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 95 - 256
Target Start/End: Complemental strand, 29059946 - 29059784
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | ||||||||  ||||||||| || | |||||| ||| |  ||||||||||||||||||||   |||||||||| ||||||| |||    
T  29059946 gcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggatt 29059847  T
Q  195 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 256  Q
    ||||||||| | |||| ||||||||||| |||||| || ||||||||||||| ||||||||||    
T  29059846 cgaacccaggaccttggttaagctagaagagacccgttccatctcatctaagtgctcttgggt 29059784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 95 - 258
Target Start/End: Original strand, 19477250 - 19477413
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | ||||||||  ||||||||| || | |||||| ||| || ||||||||||||||||||||   | |||||||| ||||||| |||    
T  19477250 gcgcaactgcggagactaatccctc-agcattgtgggacccaaatggccggcaagctctccctaagagttttaacactgttgcatgcccaaggctggatt 19477348  T
Q  195 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggtat 258  Q
    | ||||||||| |||| ||||||||||| |||||| || |||||||||||| |||||||||||||    
T  19477349 caaacccagaaccttggttaagctagaagagacccgttccatctcatctaaacgctcttgggtat 19477413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 150 - 257
Target Start/End: Complemental strand, 28537476 - 28537368
Alignment:
Q  150 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 248  Q
    |||||||||||||||||||||  | |||||||| ||||||| ||||||||||| || |||||||||| ||||| |||||| || ||||||||||||||||    
T  28537476 ctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaacccaaaaccttgattaagttagaagagacccgttccatctcatctaagcgc 28537377  T
Q  249 tcttgggta 257  Q
    |||||||||    
T  28537376 tcttgggta 28537368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 95 - 258
Target Start/End: Complemental strand, 20207638 - 20207475
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | |||||||| |||||||||  |||| |||||  ||| || |||||| ||||||||||||||  | | ||||||||||||||||||    
T  20207638 gcgcaactgcggagactaatccctcgagcattgtaggatccaaatgcgcggcaagctctccttaagagttttaacgttgttacatgcctaaggctgaatt 20207539  T
Q  195 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggtat 258  Q
     ||||||| ||||||  ||||||||||| | | |||| |||||||||||||||||||||| ||||    
T  20207538 agaaccca-aatcttagttaagctagaagaaatccatatcatctcatctaagcgctcttgagtat 20207475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 31492244 - 31492097
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | |||||||| |||||||||| || | |||||| ||| |  ||||||||||||||||||||   |||||||||| ||||||| |||    
T  31492244 gcgcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggatt 31492145  T
Q  195 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatc 241  Q
    ||||||||| | |||| ||||||||||| |||||| || |||||||||    
T  31492144 cgaacccaggaccttggttaagctagaagagacccgttccatctcatc 31492097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 111 - 256
Target Start/End: Complemental strand, 46373798 - 46373652
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    ||||| || |||||||||| || | |||| | ||| || ||||||||| |||||||||||| | || ||||| ||| ||| |||||||||||| ||||||    
T  46373798 taatctctcgagcattgtgtgacccaaataggcggcaagctctccctacgagttttaacgatgttgtatgcccaagactggattcgaacccaggatcttg 46373699  T
Q  211 attaagctagaa-agacccatttcatctcatctaagcgctcttgggt 256  Q
     ||||||||||| ||||||   |||||||||||||| ||||||||||    
T  46373698 cttaagctagaagagacccgcgtcatctcatctaagagctcttgggt 46373652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 111 - 256
Target Start/End: Original strand, 21747056 - 21747201
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    |||||||| ||| |||||| || | ||||||  ||||  |||||||||||||||||||||  || |||||||||| |||| ||||| |||||| | ||||    
T  21747056 taatccctcgaggattgtgggacccaaatgggtggtaggctctccctaagagttttaacgctgcagcatgcctaaagctggattcg-acccaggaccttg 21747154  T
Q  211 attaagctagaa-agacccatttcatctcatctaagcgctcttgggt 256  Q
     ||||| ||||| |||||| || |||||||||||| |||||||||||    
T  21747155 gttaagttagaagagacccgttccatctcatctaaacgctcttgggt 21747201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 254
Target Start/End: Original strand, 2657891 - 2657996
Alignment:
Q  150 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 248  Q
    |||||| ||||||||||||||  |||||||||| ||||||| ||| |||| |||   |||||||||| ||||| |||| | || ||||||||||||||||    
T  2657891 ctctccttaagagttttaacgttgctgcatgcccaaggctgtatttgaactcagggccttgattaagttagaagagactcgttccatctcatctaagcgc 2657990  T
Q  249 tcttgg 254  Q
    ||||||    
T  2657991 tcttgg 2657996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 7265365 - 7265481
Alignment:
Q  147 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaag 245  Q
    |||||||||||||||||||||||   |||||||||| ||| ||  || |||||||| ||  ||| ||||||||||| |||||| | ||||||||| |||     
T  7265365 aaactctccctaagagttttaacatcgctgcatgcccaagactagatccgaacccaaaactttggttaagctagaagagacccgtgtcatctcatataaa 7265464  T
Q  246 cgctcttgggtatatta 262  Q
    |||||||||||| ||||    
T  7265465 cgctcttgggtaaatta 7265481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 24579506 - 24579610
Alignment:
Q  149 actctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcg 247  Q
    |||||||||||| |||||| | | ||||||||| ||| ||||||||||||| ||||| |||| |||| |||||| |||| ||| |||| |||||||| ||    
T  24579506 actctccctaagtgttttatcaatgctgcatgcgtaaagctgaattcgaactcagaaccttggttaaactagaagagactcatgtcatgtcatctaatcg 24579605  T
Q  248 ctctt 252  Q
    |||||    
T  24579606 ctctt 24579610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 136 - 257
Target Start/End: Original strand, 40099313 - 40099435
Alignment:
Q  136 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttca 234  Q
    |||||| ||| || ||||||||||||||||||| |  |||||||  | || |||| |||||||  ||| |||||  ||||||||||| |||||| || ||    
T  40099313 aaatgggcggcaagctctccctaagagttttaatgctgctgcatatccaaagctggattcgaattcaggatcttagttaagctagaagagacccgttcca 40099412  T
Q  235 tctcatctaagcgctcttgggta 257  Q
    ||||||||||||||||| |||||    
T  40099413 tctcatctaagcgctctcgggta 40099435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 28828781 - 28828892
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    |||||| |||||| |||||||| | ||||||||| ||||||||| || ||||||||||||  ||| ||||  ||| | |||||||||||| | ||| ||     
T  28828781 taatccattgagccttgtgagacccaaatggacgataaactctctctgagagttttaacgctgctacatgtttaaagttgaattcgaacctaaaatatta 28828880  T
Q  211 attaagctagaa 222  Q
     |||||||||||    
T  28828881 gttaagctagaa 28828892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 7190415 - 7190519
Alignment:
Q  151 tctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgct 249  Q
    ||||||||| |||||||||   |||||||||| || ||||||||| ||| || || |||| ||||||||||| |||   ||| |||||||||||| ||||    
T  7190415 tctccctaaaagttttaacacggctgcatgcccaatgctgaattcaaactcataaccttggttaagctagaagagatttattccatctcatctaaacgct 7190514  T
Q  250 cttgg 254  Q
    |||||    
T  7190515 cttgg 7190519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 4059740 - 4059802
Alignment:
Q  142 acggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccaga 204  Q
    |||| |||||||| |||||||||||||||| | |||||||  ||||||| |||||||| ||||    
T  4059740 acggaaaactctctctaagagttttaacgatgttgcatgctcaaggctgtattcgaactcaga 4059802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 27484058 - 27484176
Alignment:
Q  104 cggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccag 203  Q
    |||| ||||||||||  ||||| |||||| | |||| || || || ||||||| |||||||||||||  |||||||||| | ||||| |||  ||| |||    
T  27484058 cggagattaatccctcaagcatcgtgagacccaaatcgatggaaagctctccccaagagttttaacgctgctgcatgcccatggctggatttaaactcag 27484157  T
Q  204 aatcttgattaagctagaa 222  Q
     | |||| |||||||||||    
T  27484158 gaccttggttaagctagaa 27484176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 32469974 - 32469908
Alignment:
Q  192 attcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 257  Q
    |||||||| || ||||||||||||||||||| |||| | || |||||||||||| |||| |||||||    
T  32469974 attcgaactcaaaatcttgattaagctagaagagactcgttccatctcatctaaacgcttttgggta 32469908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 252
Target Start/End: Complemental strand, 40212042 - 40211936
Alignment:
Q  147 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaag 245  Q
    ||||||| ||||||||||||||||  | |||||||| ||| ||| ||| |||||||  | ||||||||||||| || | || ||| || || ||||||||    
T  40212042 aaactcttcctaagagttttaacgttgttgcatgcccaagactggatttgaacccatgaccttgattaagctaaaagaaactcatgtcgtcacatctaag 40211943  T
Q  246 cgctctt 252  Q
    |||||||    
T  40211942 cgctctt 40211936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 31717917 - 31717969
Alignment:
Q  147 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaac 199  Q
    ||||||| ||||||||||||||||  |||||||| |||||| || ||||||||    
T  31717917 aaactcttcctaagagttttaacgttgctgcatgtctaaggttggattcgaac 31717969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 95 - 244
Target Start/End: Complemental strand, 31113475 - 31113325
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | |||||||| ||| |||||| |||| |||||| |||||  ||||||||||||||||||||   |||||||||| |||||||||||    
T  31113475 gcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaatt 31113376  T
Q  195 cgaacccagaatcttgattaagct-agaaagacccatttcatctcatctaa 244  Q
    |||||| |||| ||| |||||||| | |||||||| |||||||||||||||    
T  31113375 cgaacctagaaccttaattaagctaaaaaagacccgtttcatctcatctaa 31113325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 111 - 256
Target Start/End: Complemental strand, 10592052 - 10591906
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    |||||||| |||||||||| ||   |||||| ||| | |||||||||||||||||||||   |||||||||| ||||||| |||||||||||| | ||||    
T  10592052 taatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttg 10591953  T
Q  211 attaagctagaa-agacccatttcatctcatctaagcgctcttgggt 256  Q
     |||| |||||| |||||| || ||||||||||||| ||||||||||    
T  10591952 gttaatctagaagagacccgttccatctcatctaagtgctcttgggt 10591906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 95 - 257
Target Start/End: Original strand, 30784986 - 30785149
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | ||||||||||| |||||||||| | ||||||| || | | ||||||||||||||||||||  |||||||| | || |||| |||    
T  30784986 gcgcaactgcggagactaatcccttgaacattgtgagacctaaatggatggcagattctccctaagagttttaacgttgctgcatgtccaaagctggatt 30785085  T
Q  195 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 257  Q
    ||||||||  |  ||||||||||||||| |||| | || ||||||||||||  |||||||||||    
T  30785086 cgaacccaagacattgattaagctagaagagactcgttccatctcatctaaatgctcttgggta 30785149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 136 - 256
Target Start/End: Original strand, 2798356 - 2798476
Alignment:
Q  136 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaaagacccatttcat 235  Q
    |||||| |||||| |||||||||| ||||||||||  |||||||||  |||| || |||||||||||||| |||| |||||||||||  | || ||||||    
T  2798356 aaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccagaaccttggttaagctagaagaaaccgtttcat 2798455  T
Q  236 ctcatctaagcgctcttgggt 256  Q
    |||||||||  ||||||||||    
T  2798456 ctcatctaactgctcttgggt 2798476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 111 - 253
Target Start/End: Original strand, 18909317 - 18909457
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    |||||||| |||||||||| |||  |||||  ||| ||| |||||||||||||||||||   ||||||| || ||||||| ||||||||| || | ||||    
T  18909317 taatccctcgagcattgtgggattcaaatgagcggcaaattctccctaagagttttaacactgctgcatacccaaggctggattcgaacctaggaccttg 18909416  T
Q  211 attaagctagaaagacccatttcatctcatctaagcgctcttg 253  Q
    ||||||||||||  |||| ||  ||||||||||||||||||||    
T  18909417 attaagctagaa--acccgttctatctcatctaagcgctcttg 18909457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 136 - 256
Target Start/End: Original strand, 2804523 - 2804643
Alignment:
Q  136 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaaagacccatttcat 235  Q
    |||||| |||||| |||||||||| ||||||||||  |||||||||  |||| || ||||||||||| || |||| |||||||||||  | || ||||||    
T  2804523 aaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccaaaaccttggttaagctagaagaaaccgtttcat 2804622  T
Q  236 ctcatctaagcgctcttgggt 256  Q
    |||||||||  ||||||||||    
T  2804623 ctcatctaactgctcttgggt 2804643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 5123498 - 5123598
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | |||||||| |||||||||| || | |||||| ||| |  ||||||||||||||||||||   |||||||||| |||||||||||    
T  5123498 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctgaatt 5123597  T
Q  195 c 195  Q
    |    
T  5123598 c 5123598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 28023526 - 28023606
Alignment:
Q  178 atgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 257  Q
    ||||||||||||| |||||||| ||| |  ||| ||||||||||| ||| || || |||||||||||||||||||||||||    
T  28023526 atgcctaaggctggattcgaactcaggacattggttaagctagaagagatccgttccatctcatctaagcgctcttgggta 28023606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 36213020 - 36212963
Alignment:
Q  112 aatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaac 169  Q
    ||||||| |||||||||| || | |||||| ||| |||||||||||||||||||||||    
T  36213020 aatccctcgagcattgtgggacctaaatgggcggcaaactctccctaagagttttaac 36212963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 29553664 - 29553605
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacg 170  Q
    ||||| |||||||||| || || | |||||||||  ||||||||||||||||||||||||    
T  29553664 taatctcttgagcattctgggacccaaatggacgacaaactctccctaagagttttaacg 29553605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 12682720 - 12682630
Alignment:
Q  151 tctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcat 240  Q
    |||||| |||||||||||||  | |||||||  ||||||| |||||||| |||||  ||| ||||||||||| |||| | |||||||||||    
T  12682720 tctcccgaagagttttaacgttgttgcatgctcaaggctggattcgaactcagaacattgcttaagctagaagagactcgtttcatctcat 12682630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 95 - 256
Target Start/End: Original strand, 48204311 - 48204473
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||||| |||||||||||||||||||  | | |||||||||  || ||||||||||| |||||||||  |||||||||| ||||||| |||    
T  48204311 gcgcaactgcggaaactaatcccttgagcattgtggaacccaaatggacgacaagctctccctaagggttttaacgttgctgcatgcccaaggctggatt 48204410  T
Q  195 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 256  Q
    ||||||||  | |||| ||||||||||| |||| | || |||||||||||||| |||||||||    
T  48204411 cgaacccaagaccttggttaagctagaagagactcgttccatctcatctaagcactcttgggt 48204473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 97 - 261
Target Start/End: Complemental strand, 25224838 - 25224673
Alignment:
Q  97 gcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcg 196  Q
    |||||| |||| | ||||||||||||||||||| || | |||||| ||| ||  ||||| ||||||||||||||  ||||||| || ||  ||  |||||    
T  25224838 gcaactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaagttctccttaagagttttaacgctgctgcattcccaaaacttgattcg 25224739  T
Q  197 aacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggtatatt 261  Q
    ||||||| | |||| ||||||||||| |||||| ||||||||||||||||||||||||||| ||||    
T  25224738 aacccaggaccttggttaagctagaagagacccgtttcatctcatctaagcgctcttgggtctatt 25224673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 95 - 256
Target Start/End: Original strand, 30995965 - 30996127
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | |||||||| |||||||||| || | | |||| ||| | ||||||||||||||||||||||  | |||||||| ||||  | |||    
T  30995965 gcgcaactgcggagactaatccctcgagcattgtgggacccagatgggcggcagactctccctaagagttttaacgctgttgcatgcccaaggtcggatt 30996064  T
Q  195 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 256  Q
    ||||||||| | |||| ||||| ||||| |||||| || ||||||||||||||||||||||||    
T  30996065 cgaacccaggaccttggttaagatagaagagacccgttccatctcatctaagcgctcttgggt 30996127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 95 - 256
Target Start/End: Complemental strand, 27763862 - 27763702
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | |||||||| |||||||||| ||   |||||||||| | |||||||||||||||||||||   | || ||||| ||||||| |||    
T  27763862 gcgcaactgcggagactaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaacactgttgtatgcccaaggctggatt 27763763  T
Q  195 cgaacccagaatcttgattaagctagaaagacccatttcatctcatctaagcgctcttgggt 256  Q
    ||||||||| | |||| |||||||||  |||||| ||  |||||||||||||||||||||||    
T  27763762 cgaacccaggaccttggttaagctag-gagacccgttctatctcatctaagcgctcttgggt 27763702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 151 - 258
Target Start/End: Complemental strand, 38088720 - 38088612
Alignment:
Q  151 tctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgct 249  Q
    ||||||||||||||||||||   ||||||||| || |||| |||||||||  ||| |||| ||||||||||| |||||| ||||||||||||||||||||    
T  38088720 tctccctaagagttttaacgctactgcatgcccaaagctggattcgaacctggaaccttggttaagctagaagagacccgtttcatctcatctaagcgct 38088621  T
Q  250 cttgggtat 258  Q
    |||||||||    
T  38088620 cttgggtat 38088612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 21465972 - 21465857
Alignment:
Q  147 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaag 245  Q
    ||||||| ||| ||||||||||||  ||  | ||| ||||| || ||||||||||||||||||||| ||| ||||| | || | | ||||||||||||||    
T  21465972 aaactcttcctgagagttttaacgctgccacgtgcgtaaggatggattcgaacccagaatcttgatgaagttagaagaaacacgtgtcatctcatctaag 21465873  T
Q  246 cgctcttgggtatatt 261  Q
    || |||||||||||||    
T  21465872 cgttcttgggtatatt 21465857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 222
Target Start/End: Original strand, 48210962 - 48211087
Alignment:
Q  97 gcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcg 196  Q
    |||||| |||| || ||| ||| ||| |||||| || | |||| ||||| || |||||| ||||||||||||||  |||||||||  ||||||| |||||    
T  48210962 gcaactgcggagatcaattcctcgagtattgtgggacctaaatagacggcaagctctccataagagttttaacgttgctgcatgctcaaggctggattcg 48211061  T
Q  197 aacccagaatcttgattaagctagaa 222  Q
    |||| | || |||||||||| |||||    
T  48211062 aaccaaaaaccttgattaagttagaa 48211087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 1642747 - 1642673
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaac 169  Q
    |||||||| |||||| ||||||||  || |||||| || | |||||||||||| ||||||||||| |||||||||    
T  1642747 gcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaaagttttaac 1642673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 258
Target Start/End: Complemental strand, 14352658 - 14352531
Alignment:
Q  136 aaatggacggtaaactctccctaagagttttaacgaagctgcatgc----ctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccat 230  Q
    |||||||||  || |||||| |||||||||||||   |||||||||    | ||||||| ||||||||| |  |||||| ||||||||||| ||||   |    
T  14352658 aaatggacgacaagctctccgtaagagttttaacactgctgcatgcatgtccaaggctggattcgaaccgaatatcttggttaagctagaagagacttgt 14352559  T
Q  231 ttcatctcatctaagcgctcttgggtat 258  Q
    | ||||||||||||||||||||||||||    
T  14352558 tccatctcatctaagcgctcttgggtat 14352531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 22288320 - 22288216
Alignment:
Q  151 tctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgct 249  Q
    |||||||||||||||||||   | ||||||   |||||||||||||||| ||| |  ||| ||||| ||||| |||  ||| ||||||||||||||||||    
T  22288320 tctccctaagagttttaacattgttgcatgttcaaggctgaattcgaactcaggactttggttaagttagaagagattcatgtcatctcatctaagcgct 22288221  T
Q  250 cttgg 254  Q
     ||||    
T  22288220 tttgg 22288216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 55123222 - 55123134
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaac 199  Q
    |||||||| ||||||||||||| | ||||||   | || |||||||||||| ||||||||  |||||||  | ||||||| ||||||||    
T  55123222 taatccctcgagcattgtgagacccaaatgggtagcaagctctccctaagaattttaacgctgctgcatttccaaggctggattcgaac 55123134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 95 - 256
Target Start/End: Complemental strand, 16756223 - 16756061
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | |||||||| |||||||||| || | ||||| |||  |  |||||||||||||||||||||   ||||||||| || ||||||||    
T  16756223 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgcacgacatgctctccctaagagttttaacgcttctgcatgcccaatgctgaatt 16756124  T
Q  195 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 256  Q
    | ||||||||| |||| ||||||||||| ||| || || ||||||||||||||||||||||||    
T  16756123 caaacccagaaccttggttaagctagaagagatccgttccatctcatctaagcgctcttgggt 16756061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 97 - 259
Target Start/End: Complemental strand, 10841157 - 10840993
Alignment:
Q  97 gcaactccggaaattaatcccttgagcattgtgagatca-aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattc 195  Q
    |||||| |||||||||||||||  ||||||||| || |  ||||||  || ||  ||||||||||| ||||||||  | | |||||| |||||||||||     
T  10841157 gcaactgcggaaattaatccctcaagcattgtgggaccctaaatgggaggcaagttctccctaagaattttaacgttgttacatgcccaaggctgaattt 10841058  T
Q  196 gaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggtata 259  Q
    ||||||| ||||||| ||||| ||||| |||||  ||||||||||||||||||||||||| ||||    
T  10841057 gaacccaaaatcttggttaagatagaagagacctgtttcatctcatctaagcgctcttggatata 10840993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 25655280 - 25655391
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    ||||| ||| ||||||||| |||  |||||||||| |||||||| |||||||||||||||  |||||||||| || | | ||||||||||||||| ||||    
T  25655280 taatctctttagcattgtgtgatttaaatggacggcaaactctctctaagagttttaacgttgctgcatgcccaatgttaaattcgaacccagaaccttg 25655379  T
Q  211 attaagctagaa 222  Q
    |||||| |||||    
T  25655380 attaagttagaa 25655391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 24801481 - 24801417
Alignment:
Q  136 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacc 200  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||    
T  24801481 aaatggacggtaaactctccctaagagttttaacagtgctgcatgcctaaggctggattcgaacc 24801417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 151 - 257
Target Start/End: Complemental strand, 22022205 - 22022098
Alignment:
Q  151 tctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgct 249  Q
    |||||||||||||||||| |  |||||||||| ||||||| ||||||||||| || |||  ||||||||||| |||||  || |||||||||||| ||||    
T  22022205 tctccctaagagttttaatgctgctgcatgcccaaggctggattcgaacccacaaccttagttaagctagaagagacctgttccatctcatctaaacgct 22022106  T
Q  250 cttgggta 257  Q
    ||||||||    
T  22022105 cttgggta 22022098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 42297420 - 42297517
Alignment:
Q  74 ttgtaaacgaggtatc-tccaagcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacg 170  Q
    |||||||| ||||||| |||  |||||||| |||| | |||||||| ||||||||||||| | |||||||||| | ||||||||||||||||||||||    
T  42297420 ttgtaaactaggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatggacggcagactctccctaagagttttaacg 42297517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 32883622 - 32883697
Alignment:
Q  147 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa 222  Q
    ||||||||||||||||||||||||  |||||||| | || |||| ||||||||||| ||||||| |||||||||||    
T  32883622 aaactctccctaagagttttaacgctgctgcatgtccaatgctggattcgaacccaaaatcttggttaagctagaa 32883697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 136 - 257
Target Start/End: Complemental strand, 28724772 - 28724651
Alignment:
Q  136 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttca 234  Q
    |||||||||| | ||||| |||||||||||||||   | ||||||   ||||||||||||||| |||| | ||| |||||||||||| |||| | || ||    
T  28724772 aaatggacggcagactcttcctaagagttttaacactgttgcatgttcaaggctgaattcgaatccagga-ctttattaagctagaagagactcgttcca 28724674  T
Q  235 tctcatctaagcgctcttgggta 257  Q
    |||||||||||||||||||||||    
T  28724673 tctcatctaagcgctcttgggta 28724651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 9780992 - 9781093
Alignment:
Q  98 caactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcga 197  Q
    ||||| |||| | |||||||| |||||||||| || | |||||| |||   ||||||||||||||||||||||  |||||||||| ||||||| ||||||    
T  9780992 caactacggatactaatccctcgagcattgtgggacccaaatgggcggccgactctccctaagagttttaacgctgctgcatgcccaaggctggattcga 9781091  T
Q  198 ac 199  Q
    ||    
T  9781092 ac 9781093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 158 - 257
Target Start/End: Original strand, 17600561 - 17600661
Alignment:
Q  158 aagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 256  Q
    |||||||||||||| | |||||||  |||||||||||| ||||||  | |||| ||||||||||| |||||| | ||||||||||||| |||| ||||||    
T  17600561 aagagttttaacgatgttgcatgctcaaggctgaattctaacccaagaccttggttaagctagaagagacccgtgtcatctcatctaaacgcttttgggt 17600660  T
Q  257 a 257  Q
    |    
T  17600661 a 17600661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 31733734 - 31733798
Alignment:
Q  138 atggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaaccca 202  Q
    |||||||  |||||||||||||||||||||||   ||||||||||||| ||||||||||||||||    
T  31733734 atggacgacaaactctccctaagagttttaactctgctgcatgcctaatgctgaattcgaaccca 31733798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 246
Target Start/End: Complemental strand, 40019330 - 40019230
Alignment:
Q  147 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaag 245  Q
    |||||||||| |||||||||||||  |||||||  | ||||||||||||||||||| || |||||||||| ||||| |||| | | |||| |||||||||    
T  40019330 aaactctccccaagagttttaacgttgctgcatatccaaggctgaattcgaacccaaaaccttgattaagttagaagagactcgtatcatttcatctaag 40019231  T
Q  246 c 246  Q
    |    
T  40019230 c 40019230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 257
Target Start/End: Complemental strand, 36982444 - 36982333
Alignment:
Q  147 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaag 245  Q
    ||||||||||||||||||||||||  | |||||| ||||||||||||||||||||   | |||| |||| |||||| |||||  | |||||||||||||     
T  36982444 aaactctccctaagagttttaacgttgttgcatgtctaaggctgaattcgaacccgagaccttggttaaactagaagagacctgtgtcatctcatctaaa 36982345  T
Q  246 cgctcttgggta 257  Q
    | ||||| ||||    
T  36982344 ctctcttaggta 36982333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 45806322 - 45806215
Alignment:
Q  150 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 248  Q
    |||||||||||||||||||    |||||||||| ||| |||||||||||| ||| | |||| ||||| ||||| |||||| ||  |||||||||||||||    
T  45806322 ctctccctaagagttttaaaactgctgcatgcccaagactgaattcgaactcaggaccttggttaagatagaagagacccgttctatctcatctaagcgc 45806223  T
Q  249 tcttgggt 256  Q
    || |||||    
T  45806222 tcctgggt 45806215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 35539994 - 35540104
Alignment:
Q  109 attaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatct 208  Q
    |||||| ||||||| |||||||||   | |||||| ||||| |||| |||||||||||||||  | |||||||  ||||||||||||  || ||||| ||    
T  35539994 attaattccttgagtattgtgagactcatatggacagtaaattctctctaagagttttaacgttgttgcatgcacaaggctgaattcagactcagaacct 35540093  T
Q  209 tgattaagcta 219  Q
    |||||||||||    
T  35540094 tgattaagcta 35540104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 95 - 200
Target Start/End: Original strand, 7242807 - 7242912
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | |||||||| ||| ||| ||||||  ||||||  |||| ||||||||||||||||||||||  |||||||| | ||| ||| |||    
T  7242807 gcgcaactgcggagactaatccctcgagtattatgagattcaaatgggaggtagactctccctaagagttttaacgttgctgcatgtccaagactggatt 7242906  T
Q  195 cgaacc 200  Q
    ||||||    
T  7242907 cgaacc 7242912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 46864216 - 46864104
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    |||||||| || |||||||| | | |||||||||| ||  ||||||||||| ||||||||   ||||||||| || |||| ||| ||||||| ||  |||    
T  46864216 taatccctcgaacattgtgaaacccaaatggacggcaagttctccctaagaattttaacgctactgcatgcccaaagctggatttgaacccaaaactttg 46864117  T
Q  211 attaagctagaaa 223  Q
    |||||||||||||    
T  46864116 attaagctagaaa 46864104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 147 - 253
Target Start/End: Complemental strand, 35692574 - 35692467
Alignment:
Q  147 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaaa-gacccatttcatctcatctaag 245  Q
    ||||||||||||||||||||||||  | |||||||| || | || |||||||| ||  |  ||| |||| ||||||| |||||||  |||||||||||||    
T  35692574 aaactctccctaagagttttaacgtcgttgcatgcccaatgttggattcgaactcaagacattggttaaactagaaaagacccatgccatctcatctaag 35692475  T
Q  246 cgctcttg 253  Q
    ||||||||    
T  35692474 cgctcttg 35692467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 36522277 - 36522340
Alignment:
Q  136 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaac 199  Q
    |||||||||| |||||||||||||||||||||||   |||||||| ||||| ||| ||||||||    
T  36522277 aaatggacggcaaactctccctaagagttttaaccttgctgcatgtctaagactgtattcgaac 36522340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 7624935 - 7624849
Alignment:
Q  175 tgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaaagacccatttcatctcatctaagcgctcttgggtatatt 261  Q
    |||||| | ||||||| ||| ||||||| ||||||| |||||||||||||||   || |||||||| ||| |||||| |||||||||    
T  7624935 tgcatgtccaaggctggatttgaacccataatcttggttaagctagaaagacttgttccatctcatttaaacgctctcgggtatatt 7624849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 12035675 - 12035585
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagag-ttttaacgaagctgcatgcctaaggctgaattcgaacc 200  Q
    |||||||| |||||||||| || | |||||| ||| | |||||||||||||| ||||||| | | |||||||| ||||||| |||||||||    
T  12035675 taatccctcgagcattgtgggacccaaatgggcggcagactctccctaagagtttttaacaatgttgcatgccaaaggctggattcgaacc 12035585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 257
Target Start/End: Complemental strand, 32534198 - 32534061
Alignment:
Q  120 gagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagcta 219  Q
    ||||||||||||| | || ||| |||||| ||||| |||||||||||||||  | |||||||  || |||||||| ||| ||| || |||| ||||||||    
T  32534198 gagcattgtgagacctaa-tgggcggtaagctctctctaagagttttaacgttgttgcatgctcaaagctgaatttgaatccaaaaccttggttaagcta 32534100  T
Q  220 gaa-agacccatttcatctcatctaagcgctcttgggta 257  Q
    ||| | |||| | |||| |||||||| || |||||||||    
T  32534099 gaagaaacccgtgtcatatcatctaaacgatcttgggta 32534061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 18428158 - 18428265
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    |||||||| |||||||||| |  |||| ||||| | | ||||||||||| |||||||||   |||||||||| |||| || ||||||| |||||| ||||    
T  18428158 taatccctcgagcattgtggggccaaa-tggacagcagactctccctaaaagttttaacactgctgcatgcccaaggttggattcgaatccagaaccttg 18428256  T
Q  211 attaagcta 219  Q
     ||||||||    
T  18428257 gttaagcta 18428265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 36806736 - 36806649
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaa 198  Q
    |||||||| ||||||||||  | | |||||| ||| | || |||||||||||||||||||   ||| ||||| |||||||||||||||    
T  36806736 taatccctcgagcattgtggaacccaaatgggcggcagacactccctaagagttttaacgctactgtatgcccaaggctgaattcgaa 36806649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 15642596 - 15642526
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttt 165  Q
    |||||||| |||| | ||||| || |||||||||| || | |||||| ||| |||||||||||||||||||    
T  15642596 gcgcaactgcggagaataatctctcgagcattgtgggacccaaatgggcggcaaactctccctaagagttt 15642526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 33721051 - 33721005
Alignment:
Q  125 ttgtgagatcaaaatggacggtaaactctccctaagagttttaacga 171  Q
    ||||| |||| |||||||||| |||||||||||||||| ||||||||    
T  33721051 ttgtgggatccaaatggacggcaaactctccctaagagatttaacga 33721005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 29124825 - 29124736
Alignment:
Q  156 ctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaa 244  Q
    |||||||||||||||  |||||||||| || |||| |||||||| ||  | | || ||||||||||| |||| | |||||||||||||||    
T  29124825 ctaagagttttaacgctgctgcatgcccaatgctggattcgaactcatgaccctggttaagctagaagagactcgtttcatctcatctaa 29124736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 16552590 - 16552518
Alignment:
Q  147 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagcta 219  Q
    |||||||  ||||||||||||||| ||||| ||| | || | |||||| ||| ||| ||||||||||||||||    
T  16552590 aaactctttctaagagttttaacgcagctgtatgtccaatgttgaatttgaatccataatcttgattaagcta 16552518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 136 - 258
Target Start/End: Original strand, 12133271 - 12133394
Alignment:
Q  136 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttca 234  Q
    |||||||||| |  |||||||||||||||||||||  |||||||| | ||||||| |||||||||||  | |||||||||||||||| |||| | || ||    
T  12133271 aaatggacggcaggctctccctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaagagactcgttcca 12133370  T
Q  235 tctcatctaagcgctcttgggtat 258  Q
    ||||||||||||||||||||||||    
T  12133371 tctcatctaagcgctcttgggtat 12133394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 95 - 261
Target Start/End: Original strand, 31579229 - 31579396
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||||| |||| ||| |||||||||| ||   |||||| ||| | ||||||||||| |||||||||   | |||||||| ||||||| |||    
T  31579229 gcgcaactgcggaaactaattcctcgagcattgtgggacttaaatgggcggcagactctccctaaaagttttaacactgttgcatgcccaaggctggatt 31579328  T
Q  195 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggtatatt 261  Q
    ||||||||  | |||||||||||||||| |||||| || ||||||||||||| |||||||||| ||||    
T  31579329 cgaacccaagaccttgattaagctagaagagacccgttacatctcatctaagtgctcttgggtctatt 31579396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 97 - 257
Target Start/End: Complemental strand, 5394535 - 5394375
Alignment:
Q  97 gcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcg 196  Q
    |||||| |||| | |||||||  |||||||||| || | |||||| ||| |  |||||||||||||||||||| | |||||||||| ||||||| |||||    
T  5394535 gcaactgcggagactaatcccacgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaac-atgctgcatgcccaaggctggattcg 5394437  T
Q  197 aacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 257  Q
    ||||||| | |||| ||||||||||| |||| | || |||||||||||||||||||| ||||    
T  5394436 aacccaggaccttggttaagctagaagagactcgttccatctcatctaagcgctctttggta 5394375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 37568785 - 37568889
Alignment:
Q  153 tccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctct 251  Q
    |||||||||||||||||   |||||||||||||||||| |||||||||||| | |||| ||||||||||| | |||| || ||||||||||||| |||||    
T  37568785 tccctaagagttttaacactgctgcatgcctaaggctggattcgaacccaggaccttggttaagctagaagaaacccgttccatctcatctaagtgctct 37568884  T
Q  252 tgggt 256  Q
    |||||    
T  37568885 tgggt 37568889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 42745170 - 42745278
Alignment:
Q  149 actctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcg 247  Q
    |||||||||||||||||||||   |||||||||| ||||||| |||||||||||  | |||| |||||||| || |||||| || |||||||||||||||    
T  42745170 actctccctaagagttttaacattgctgcatgcccaaggctggattcgaacccaagaccttggttaagctataagagacccgttccatctcatctaagcg 42745269  T
Q  248 ctcttgggt 256  Q
    |||||||||    
T  42745270 ctcttgggt 42745278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 44732628 - 44732735
Alignment:
Q  150 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 248  Q
    ||||||||||||||||||||   |||||||||| ||||||| |||||||||||| | |||| |||||||| || |||||| || ||||||||||||| ||    
T  44732628 ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctataagagacccgttccatctcatctaagtgc 44732727  T
Q  249 tcttgggt 256  Q
    ||||||||    
T  44732728 tcttgggt 44732735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 89 - 253
Target Start/End: Complemental strand, 993900 - 993736
Alignment:
Q  89 ctccaagcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggc 188  Q
    ||||| |||||||  |||||| |||||| || || |||||  || | |||||| ||| ||  ||||||||||||||||| ||  |||||||||| ||||     
T  993900 ctccacgcgcaacggcggaaactaatccattcagtattgtaggacccaaatgggcggcaagttctccctaagagtttta-cgctgctgcatgcccaaggt 993802  T
Q  189 tgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttg 253  Q
    ||||||||||||||| | |||| |||||||| || |||| | | ||||||||||||||||||||||    
T  993801 tgaattcgaacccaggaccttggttaagctataagagacacgtgtcatctcatctaagcgctcttg 993736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 18105378 - 18105520
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    |||||||| ||| |||||||||   |||||| ||| |  |||||| ||||| ||||||||  | |||||||| ||||||| |||||||||||| | ||||    
T  18105378 taatccctcgagtattgtgagactcaaatgggcggcaggctctccataagaattttaacgttgttgcatgcccaaggctggattcgaacccaggaccttg 18105477  T
Q  211 attaagctagaa-agacccatttcatctcatctaagcgctctt 252  Q
     ||||||||||| |||| | || |||||||| |||||||||||    
T  18105478 gttaagctagaagagactcgttccatctcatataagcgctctt 18105520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 108 - 257
Target Start/End: Complemental strand, 33757105 - 33756955
Alignment:
Q  108 aattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatc 207  Q
    |||||||||||  ||||||||| |||  |||||  ||  || |||| ||||||||||||||||    || ||||  ||||||||||||||||  |||| |    
T  33757105 aattaatccctcaagcattgtgcgattcaaatgagcgacaagctcttcctaagagttttaacgctattgtatgctcaaggctgaattcgaactaagaacc 33757006  T
Q  208 ttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 257  Q
    ||||||||||||||| |||||| | |||||||||||||| | |||||||||    
T  33757005 ttgattaagctagaagagacccgtgtcatctcatctaagtgttcttgggta 33756955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 150 - 254
Target Start/End: Complemental strand, 7157584 - 7157479
Alignment:
Q  150 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 248  Q
    |||||||||||||||||||||  |||||||||| ||||||  ||||||||| || |||||| ||||| ||||| |||| | ||  ||| |||||||||||    
T  7157584 ctctccctaagagttttaacgttgctgcatgcccaaggctagattcgaacctaggatcttggttaagttagaagagactcgttctatcccatctaagcgc 7157485  T
Q  249 tcttgg 254  Q
    | ||||    
T  7157484 tattgg 7157479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 120 - 254
Target Start/End: Original strand, 39401094 - 39401229
Alignment:
Q  120 gagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagct- 218  Q
    |||||||||| || | |||||||||   | |||||||||| |||||||| ||  ||||||||| ||||||||||||||| |||  |||||| ||||| |     
T  39401094 gagcattgtgggacctaaatggacgacgagctctccctaaaagttttaatgatactgcatgcccaaggctgaattcgaatccaagatcttggttaagtta 39401193  T
Q  219 agaaagacccatttcatctcatctaagcgctcttgg 254  Q
    | |||||| | | ||||||||||||| || ||||||    
T  39401194 aaaaagactcgtgtcatctcatctaaacgttcttgg 39401229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 28366012 - 28365928
Alignment:
Q  173 gctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 256  Q
    |||||||||| ||||||| |||||||| ||  | |||| ||||| ||||| |||| | || ||||||||||||||||||||||||    
T  28366012 gctgcatgcccaaggctgcattcgaactcacgaccttggttaagttagaagagacgcgttccatctcatctaagcgctcttgggt 28365928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 38743880 - 38743792
Alignment:
Q  94 agcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcc 182  Q
    ||||||||| |||| | ||||||||  |||||||||||||| |||||  ||| || ||||||| || ||||||||||  ||||||||||    
T  38743880 agcgcaactgcggagactaatccctaaagcattgtgagatccaaatgagcggcaagctctccccaaaagttttaacgttgctgcatgcc 38743792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 35476284 - 35476193
Alignment:
Q  125 ttgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaag 216  Q
    |||||||| | |||||||||  |||||||||| |||||||||||| | | |||||||| || ||| |||| |||| ||  ||||||||||||    
T  35476284 ttgtgagacccaaatggacgacaaactctcccgaagagttttaacaatgttgcatgcccaaagctaaatttgaactcaatatcttgattaag 35476193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 39314546 - 39314487
Alignment:
Q  136 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattc 195  Q
    |||||| ||| |||||||||||| ||||||||||| ||||||||||| ||  ||||||||    
T  39314546 aaatgggcggcaaactctccctacgagttttaacgcagctgcatgcccaaaactgaattc 39314487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 24359653 - 24359544
Alignment:
Q  147 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaag 245  Q
    ||||||||||||| |||||||| |  |||||||    ||||||| |||| |||| || | |||||||||| ||||| ||||  ||||||| |||||||||    
T  24359653 aaactctccctaaaagttttaatgttgctgcattatcaaggctggattcaaacctaggaccttgattaagttagaagagact-atttcatatcatctaag 24359555  T
Q  246 cgctcttgggt 256  Q
    |||||||||||    
T  24359554 cgctcttgggt 24359544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 25988683 - 25988641
Alignment:
Q  173 gctgcatgcctaaggctgaattcgaacccagaatcttgattaa 215  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||    
T  25988683 gctgtatgcccaaggctgaattcgaacccagaatcttggttaa 25988641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 44752249 - 44752357
Alignment:
Q  150 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 248  Q
    ||||||| |||||||||||||  | |||||||| ||| ||  ||||||||| || |  ||| ||||||||||| ||||   | |||||||||||||||||    
T  44752249 ctctcccaaagagttttaacgttgttgcatgcccaagacttgattcgaacctaggagtttggttaagctagaagagacttgtatcatctcatctaagcgc 44752348  T
Q  249 tcttgggta 257  Q
     ||||||||    
T  44752349 acttgggta 44752357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 21910292 - 21910183
Alignment:
Q  149 actctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcg 247  Q
    |||||| |||||||||||||||| | |||||||| ||||||| |||||||||||| |||||| ||||||||||| ||||   ||||||||||||||| ||    
T  21910292 actctctctaagagttttaacgatgttgcatgcccaaggctggattcgaacccaggatcttggttaagctagaagagacttgtttcatctcatctaaacg 21910193  T
Q  248 ctcttgggta 257  Q
    ||||||||||    
T  21910192 ctcttgggta 21910183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 12836913 - 12837008
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaat 206  Q
    ||||||||  ||||||||| || | |||||| |||  | |||||||||||||||||||||  |||||||||||||||||| |||||||||||||||    
T  12836913 taatccctcaagcattgtgggacccaaatgggcggcgagctctccctaagagttttaacgctgctgcatgcctaaggctggattcgaacccagaat 12837008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 31107534 - 31107653
Alignment:
Q  136 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttca 234  Q
    ||||||||||||| ||||||| |||||||||||||  | |||||| | || |||| |||||||| ||||| |||  ||||| ||||| ||||||||||||    
T  31107534 aaatggacggtaagctctcccaaagagttttaacgctgttgcatgtccaatgctggattcgaactcagaaccttagttaagttagaagagacccatttca 31107633  T
Q  235 tctcatctaagcgctcttgg 254  Q
    |||||||||| |||| ||||    
T  31107634 tctcatctaaacgctattgg 31107653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 257
Target Start/End: Complemental strand, 12411273 - 12411126
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    ||||||||  ||||||||| ||   |||||| ||| | ||||| ||||||||||||||||  |||||||||| ||||||| |||||||| ||| | ||||    
T  12411273 taatccctcaagcattgtgggacttaaatgggcggcagactcttcctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttg 12411174  T
Q  211 attaagctagaa-agacccatttcatctcatctaagcgctcttgggta 257  Q
     ||||| ||||| |||||  || |||||||||||||| ||||| ||||    
T  12411173 gttaagttagaagagacctgttccatctcatctaagcactcttaggta 12411126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 31489609 - 31489532
Alignment:
Q  142 acggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagcta 219  Q
    |||| ||||||||||||| ||||||||||  ||||||| || || |||| |||| ||||||||| |||||||||||||    
T  31489609 acggaaaactctccctaaaagttttaacgttgctgcatacccaaagctgtattcaaacccagaaccttgattaagcta 31489532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 111 - 253
Target Start/End: Complemental strand, 423780 - 423637
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    |||||||| |||||||||| ||   |||||||||| |   | || |||||||||||||||  || ||||||| ||||||| |||| |||||| || ||||    
T  423780 taatccctcgagcattgtgggactcaaatggacggcagtttatctctaagagttttaacgctgcagcatgcccaaggctggattcaaacccaaaaccttg 423681  T
Q  211 attaagctagaa-agacccatttcatctcatctaagcgctcttg 253  Q
     |||| |||||| ||| |  || |||||||||||||||||||||    
T  423680 gttaaactagaagagatctgttccatctcatctaagcgctcttg 423637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 29185405 - 29185306
Alignment:
Q  124 attgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaaa 223  Q
    ||||||||| | ||||||||| || | ||||||||||||||||||||  | |||||| |||| |||| ||||||||| |||| |||  |||| |||||||    
T  29185405 attgtgagacctaaatggacgatatattctccctaagagttttaacgttgatgcatgtctaatgctggattcgaacctagaaccttagttaaactagaaa 29185306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 253
Target Start/End: Complemental strand, 278516 - 278374
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 210  Q
    ||||||||||||  ||||| || | |||||||||| ||||||||| |||||||||||| |  | |||||||| || |||| |||| ||| ||  | |||     
T  278516 taatcccttgagttttgtgggacctaaatggacggcaaactctccataagagttttaatg-tgttgcatgcccaaagctggattcaaactcaagacctta 278418  T
Q  211 attaagctagaa-agacccatttcatctcatctaagcgctcttg 253  Q
     ||||||||||| |||| | | ||||||||||||| ||||||||    
T  278417 gttaagctagaagagactcgtgtcatctcatctaaacgctcttg 278374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 25084120 - 25084013
Alignment:
Q  150 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 248  Q
    ||||||||||||||||||||   |||||||| | ||| |||||||||||| ||  |  ||||||||||||||| ||||   | |||||||||||||| |     
T  25084120 ctctccctaagagttttaacattgctgcatgtccaagactgaattcgaactcaagactttgattaagctagaagagacttgtgtcatctcatctaagtgt 25084021  T
Q  249 tcttgggt 256  Q
    ||||||||    
T  25084020 tcttgggt 25084013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 28099343 - 28099276
Alignment:
Q  136 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccag 203  Q
    |||||||||  ||| ||||||||| |||||||||   |||||||||| ||||||| ||||||||||||    
T  28099343 aaatggacgacaaattctccctaaaagttttaacactgctgcatgcccaaggctggattcgaacccag 28099276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 28933238 - 28933179
Alignment:
Q  136 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattc 195  Q
    |||||| ||| |||||||| |||||| ||||||||| | |||||| ||||||||||||||    
T  28933238 aaatgggcggcaaactctctctaagaattttaacgatgttgcatgtctaaggctgaattc 28933179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 261
Target Start/End: Complemental strand, 33793048 - 33792945
Alignment:
Q  159 agagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 257  Q
    ||||||||||||  | |||||||  ||||||||||| |||| ||| ||||||||||||||| || ||||   | ||||||||| ||||||||||| | ||    
T  33793048 agagttttaacgttgttgcatgcgcaaggctgaatttgaactcaggatcttgattaagctaaaagagacttttgtcatctcatttaagcgctcttagata 33792949  T
Q  258 tatt 261  Q
    ||||    
T  33792948 tatt 33792945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 256
Target Start/End: Complemental strand, 5944947 - 5944821
Alignment:
Q  131 gatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agaccca 229  Q
    |||| |||||| ||| ||||||||||||| ||||||||| | | | |||| | ||| |||||||||||| ||| | |||| ||||| || || ||||||     
T  5944947 gatctaaatgggcggcaaactctccctaaaagttttaacaatgttacatgtcaaagactgaattcgaactcaggaccttggttaagttaaaagagacccg 5944848  T
Q  230 tttcatctcatctaagcgctcttgggt 256  Q
    | |||||| || ||||| |||||||||    
T  5944847 tatcatcttatataagcactcttgggt 5944821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 9536914 - 9536844
Alignment:
Q  89 ctccaagcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaa 159  Q
    |||| ||||||||| |||| | |||||||| ||||||||||  ||| ||||||||||||  ||||||||||    
T  9536914 ctccgagcgcaactgcggagactaatccctcgagcattgtggaatctaaatggacggtaggctctccctaa 9536844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 17177270 - 17177192
Alignment:
Q  104 cggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcc 182  Q
    |||| |||||||||| ||| ||||||||||| |||| ||| | ||||| ||| |||||||||||| |  ||||||||||    
T  17177270 cggagattaatccctcgagtattgtgagatccaaatagacagaaaactttccttaagagttttaaagctgctgcatgcc 17177192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 24448203 - 24448252
Alignment:
Q  148 aactctccctaagagttttaacgaagctgcatgcctaaggctgaattcga 197  Q
    |||||||||||||| ||||||| | |||||||| ||||||||| ||||||    
T  24448203 aactctccctaagaattttaactatgctgcatgtctaaggctgcattcga 24448252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 222
Target Start/End: Complemental strand, 26472 - 26345
Alignment:
Q  95 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 194  Q
    |||||||| |||| | ||||| || || ||||||| || | |||||| ||| |  ||||||||||||||||||||   |||||||||| ||||||| |||    
T  26472 gcgcaactgcggagactaatctctcgaacattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggatt 26373  T
Q  195 cgaacccagaatcttgattaagctagaa 222  Q
    ||||||||| | |||| |||||||||||    
T  26372 cgaacccaggaccttggttaagctagaa 26345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 167916 - 167834
Alignment:
Q  173 gctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 256  Q
    |||||||||| ||||||| ||| ||||||   | |||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  167916 gctgcatgcccaaggctggatttgaacccg--accttgattaagctagaagagacccgtttcatctcatctaagcgctcttgggt 167834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 27241 - 27296
Alignment:
Q  111 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagtttt 166  Q
    |||||||| |||||| |||||||| |||||| ||| || |||||||||||||||||    
T  27241 taatccctcgagcatcgtgagatccaaatgggcggcaagctctccctaagagtttt 27296  T

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