View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11179_low_3 (Length: 605)
Name: NF11179_low_3
Description: NF11179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11179_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 530; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Complemental strand, 47804877 - 47804289
Alignment:
| Q |
1 |
aaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacgagagaaatgatcaatcattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47804877 |
aaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttgatcatgttgaacacctaaaagttaaacaagagaaatgatcaatcattt |
47804778 |
T |
|
| Q |
101 |
aaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactctcacaagat |
200 |
Q |
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| T |
47804777 |
aaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactctcacaagat |
47804678 |
T |
|
| Q |
201 |
ggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagctttcaggttgtttcgataactc |
300 |
Q |
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| T |
47804677 |
ggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagctttcaggttgtttcgataactc |
47804578 |
T |
|
| Q |
301 |
gttcaccaagctttgttttaggtagataagcttgatattattggcattaatggatgcaaaacatccaggttttaatggatgcaaaacatccaagttggac |
400 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804577 |
gatcaccaagctttgttttaggtagataagcttgatattattggcattaatggatgcaaaacatccaggttttaatggatgcaaaacatccaagttggac |
47804478 |
T |
|
| Q |
401 |
aaccggctttccagacttgtctgatcatcgatatccttgtctgccgaacaa-nnnnnnnnncatcgtgattttcctttccagatgaatcatctgaatttt |
499 |
Q |
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| T |
47804477 |
aaccggctttccagacatgtctgatcatcgatatccttgtctgccgaacaattttttttttcatcgtgattttcctttctagatgaatcatctgaatttt |
47804378 |
T |
|
| Q |
500 |
tcgcaatgtgaaactcgaggagagaatatatctgagacttcaacacagctttctttttaaatataggaaacaacttgtcatcagggagg |
588 |
Q |
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| T |
47804377 |
tcgcaatgtgaaactcgagtagagaatatatctgagacttcaacacagctttctttttaaatataggaaacaacttgtcatcagggagg |
47804289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 47807439 - 47807066
Alignment:
| Q |
1 |
aaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacgagagaaatgatcaatcattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47807439 |
aaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacaagagaaatgatcaatcattt |
47807340 |
T |
|
| Q |
101 |
aaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactctcacaagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47807339 |
aaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactctcacaagat |
47807240 |
T |
|
| Q |
201 |
ggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagctttcaggttgtttcgataactc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
47807239 |
ggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaatcaccctactcgcaaagctttcaggctgtttcgataactc |
47807140 |
T |
|
| Q |
301 |
gttcaccaagctttgttttaggtagataagcttgatattattggcattaatggatgcaaaacatccaggtttta |
374 |
Q |
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| ||||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
47807139 |
gaataccaagcttcgctttaggtagataagcttgatatttttggcattaatcgatgcaaaacatccaggtttta |
47807066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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