View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11179_low_4 (Length: 542)
Name: NF11179_low_4
Description: NF11179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11179_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 7665502 - 7664984
Alignment:
| Q |
1 |
tcattctcacttcgccttgaccattcgcatggccgggaataaata----tttcaaacctttttccaccggtgctccaggacaactcaagtatcttgtcat |
96 |
Q |
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| T |
7665502 |
tcattctcacttcgccttgaccattcgcatggctgggaataaataaatattccaaacccttttccaccggtgctccaggacaactcaagtatcttgtcat |
7665403 |
T |
|
| Q |
97 |
agttgcgtattacttcactaagcgatataagcataaactctagccaaaaatcaccgctacaacgtactttgtttcttcaagcgaaacatgctcacccgat |
196 |
Q |
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| T |
7665402 |
agttgcgtattacttcactaagcgatataagcataaactctagccaaaaatcaccgctacaacgtactttgtttcttcaagcgaaacatgctcacccgat |
7665303 |
T |
|
| Q |
197 |
cggacatcctcaagatagtagtcacatacaatgggatccaatttaccaataaaaaagttccaatactttctaacaactttaaaagttaaagaacacttca |
296 |
Q |
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| T |
7665302 |
cggacatcctcaagatagtagtcacatacaatgggatccaatttaccaataaaaaagttccaatactttctaacaactttaaaagttaaacaacacttca |
7665203 |
T |
|
| Q |
297 |
cttcgatgaaacatccttgacaaatggtcaagcagaatct-ctaactatattcttctccaggaattatacaccaggtagcgcaactgatcatttaacacc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7665202 |
cttcgatgaaacatccttgacaaatggtcaagcagaatctgctaactatattcttctccaggaattatacaccaggtagcgcaactcatca--------- |
7665112 |
T |
|
| Q |
396 |
aaatcatcaatagtagtttgagaacagaaagtatccatgtgaatatacaggaggtttccatctagtcaaaagtcaaaaccaatgaccccactaaaagcaa |
495 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7665111 |
-----atagtaagtagtttgagaacagaaagtatccacgtgaatatacaggaggtttccatctagtcaaaagtcaaaaccaatgaccccactaaaagcaa |
7665017 |
T |
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| Q |
496 |
gaaaaagtgcttacaaaataacaataataactg |
528 |
Q |
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| T |
7665016 |
gaaaaagtgcttacaaaataacaataataactg |
7664984 |
T |
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