View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11179_low_8 (Length: 410)
Name: NF11179_low_8
Description: NF11179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11179_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 8022718 - 8022336
Alignment:
| Q |
18 |
agaccattgttggagaaaatccgcgcacaccaaaagacaaatatatatgggaaattgttgcacatcgtcttcgatggagtgggccggagaagattgggga |
117 |
Q |
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| T |
8022718 |
agaccattgttggagaaaatccgcgcacaccaaaagacaaatatatatgggaaattgttgcacatcatcttcgatggagtgggccggagaagattgggga |
8022619 |
T |
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| Q |
118 |
tcactgacatcaaaccataagagtaggatgaattcaagcaaagtttttgatgaagttcatggtttgagtttggggaacatagagaaagagaagcttttag |
217 |
Q |
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| T |
8022618 |
tcactgacatcaaaccataagagtaggatgaattcaagcaaagtttttgatgaagttcatggtttgagtttggggaacatagagaaagagaagcttttag |
8022519 |
T |
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| Q |
218 |
gtgcactaagagcttcttctgatgctaatggtaaggtgaaaataaagatatcaaagaaagaacttgcggtattgttgggagaatcagagaaacagggtgt |
317 |
Q |
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| T |
8022518 |
gtgcactaagagcttcttctgatgctaatggtaaggtgaaaataaagatatcaaagaaagaacttgcggtattgttgggagaatcagagaaacagggtgt |
8022419 |
T |
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| Q |
318 |
tggaagcacaaaacatgcttctgctgaacatgttttggttggtttgttaaatgctagagatcatgtcaaccatgatgtccatc |
400 |
Q |
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| T |
8022418 |
tggaagcacaaaacatgcttctgctgaacatgttttggttggtttgctaaatgctagagatcatgtcaaccatgatgtccatc |
8022336 |
T |
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