View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11179_low_9 (Length: 370)
Name: NF11179_low_9
Description: NF11179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11179_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 127 - 358
Target Start/End: Original strand, 12473457 - 12473687
Alignment:
| Q |
127 |
tgtaatgaaatgttatatatgttgtgtttagtataatgtaattagttgtttaattgttcttggatggtttgattacaattattaaagcaataaaccattt |
226 |
Q |
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| T |
12473457 |
tgtaatgaaatgttatatatgttgtgtt-agtataatgtaattagttgtttaattgttcttggatggtttgattacaattattaaagcaataaaccattt |
12473555 |
T |
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| Q |
227 |
agttgaaataatttgtgcatatcttttcaaacttttgggttattaatatttgctcctataatgttagctttatgaacgaacttttttgagatggttttgc |
326 |
Q |
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| T |
12473556 |
agttgaaataatttgtgcatatcttttcaaacttttgggttattaatatttgctcctataatgttagctttatgaacgaacttttttgagatggttttgc |
12473655 |
T |
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| Q |
327 |
aggaaaatatctacgacttctctgtctctctc |
358 |
Q |
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| T |
12473656 |
aggaaaatatctacgacttctctttctctctc |
12473687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 12473321 - 12473431
Alignment:
| Q |
19 |
gtcataggtgctcaaagagacactacaaccttatctgagtcaacaatatgtttgcttatggatagatttgtgccttgctaaaatatgttgtttattcaaa |
118 |
Q |
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| T |
12473321 |
gtcataggtgctcaaagagacactacaaccttgtctgagtcaacaatatgtttgcttatggatagatttgtgccttgctaaaatatgttgtttattcaac |
12473420 |
T |
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| Q |
119 |
tatatcaatgt |
129 |
Q |
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| T |
12473421 |
tatatcaatgt |
12473431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 186 - 279
Target Start/End: Original strand, 12457537 - 12457632
Alignment:
| Q |
186 |
ttggatggtttgattacaattattaaagcaataaaccatttagttgaaataatttgtgcata-tcttttcaaa-cttttgggttattaatatttgc |
279 |
Q |
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| T |
12457537 |
ttggatggtttgattacaattattaaagcaataaactatttagttgaaataatttgcgtatatttttttcaaattttttgggttattattatttgc |
12457632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 12457265 - 12457350
Alignment:
| Q |
20 |
tcataggtgctcaaagagacactacaaccttatctgagtcaacaatatgtttgcttatggatagatttgtgccttgctaaaatatg |
105 |
Q |
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| T |
12457265 |
tcatagctgttcatagagacactgcaactatttcagagtcaacaatatgtttgcttatggatagatttgtgccctgctaatatatg |
12457350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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