View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1117_high_1 (Length: 294)
Name: NF1117_high_1
Description: NF1117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1117_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 30 - 289
Target Start/End: Complemental strand, 626649 - 626390
Alignment:
| Q |
30 |
ttttatgtgttgccaggctctttctcagttcttaggaccatcataccaaatacagcatgtaatttatgttgtattgtacatggtcccctttcattttcaa |
129 |
Q |
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| T |
626649 |
ttttatgtgttgccaggctctttctcagttcttaggaccatcataccaaatacagcatgtaatttatgttgtattgtacatggtcccctttcattttcaa |
626550 |
T |
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| Q |
130 |
cacgtatatcacacaaatatgcttgttctgttgttcatgtttatgtgtcacatagttatcataccaccacctaaccaacccatcgcatcgttcattgagc |
229 |
Q |
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| T |
626549 |
cacgtatatcacacaaatatgcttgttctgttgttcatgtttatgtgtcacatagttatcataccaccacctaaccaacccatcgcatcgttcattgagc |
626450 |
T |
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| Q |
230 |
ttcaagttactatgacagttcatcaaggtctaaaatcgcagttgtgtttctaagaataat |
289 |
Q |
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| T |
626449 |
ttcaagttactatgatagttcaccaaggtctaaaatcgcagtcgtgtttctaagaataat |
626390 |
T |
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