View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1117_low_10 (Length: 250)

Name: NF1117_low_10
Description: NF1117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1117_low_10
NF1117_low_10
[»] chr8 (3 HSPs)
chr8 (3-245)||(25890957-25891199)
chr8 (3-55)||(18309115-18309167)
chr8 (131-203)||(37718866-37718938)
[»] chr7 (7 HSPs)
chr7 (3-194)||(17506963-17507154)
chr7 (3-194)||(17546060-17546251)
chr7 (22-245)||(15645127-15645350)
chr7 (190-247)||(17504562-17504619)
chr7 (190-247)||(17548595-17548652)
chr7 (131-206)||(551599-551674)
chr7 (22-91)||(45976574-45976643)
[»] chr6 (1 HSPs)
chr6 (22-206)||(7956698-7956882)
[»] chr3 (2 HSPs)
chr3 (44-245)||(14853834-14854035)
chr3 (155-207)||(18381101-18381153)
[»] chr1 (1 HSPs)
chr1 (3-99)||(39584909-39585005)
[»] chr5 (1 HSPs)
chr5 (38-94)||(32239704-32239760)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 25890957 - 25891199
Alignment:
Q  3 gcaccacagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcac 102  Q
    |||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||    
T  25890957 gcaccagagaccacagctccccaaagcaagaacaagagagaaacaaatgacgagcatcctccacctggccacaccccgaaatacacaaagaatcggccac 25891056  T
Q  103 attaagaataccacgtggtgccaggttagatttagtaggtaatcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgc 202  Q
     ||||| |||||||||| |||||  ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  25891057 tttaagtataccacgtgatgccaaattagatttagtaggtaggcgatcacggagcagtcgccatgcaaagattgacacctttagaggaacctgattatgc 25891156  T
Q  203 caaactaggtcggcaacctgagtaacctgcggtacctcctgag 245  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  25891157 caaattaggtcggcaacctgagtaacctgcggtacctcctgag 25891199  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 18309167 - 18309115
Alignment:
Q  3 gcaccacagaccacagctccccaaagcaaggacacgagagaaacaaatgacta 55  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18309167 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgacta 18309115  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 37718866 - 37718938
Alignment:
Q  131 gatttagtaggtaatcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgcc 203  Q
    ||||| |||||||| |||||||||||||| ||||| ||||| |||||||||||||   ||||||| |||||||    
T  37718866 gatttggtaggtaagcgatcacggagcagccgccaagcaaaaattgacacctttaagggaacctgtttatgcc 37718938  T

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Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 17507154 - 17506963
Alignment:
Q  3 gcaccacagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcac 102  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  17507154 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacaccaagaatcggtcac 17507055  T
Q  103 attaagaataccacgtggtgccaggttagatttagtaggtaatcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacct 194  Q
    |||||| |||||||||| |||||| ||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  17507054 attaagtataccacgtgatgccagattagatttagtaggtatgcgatcacggagcagtcgccacgcaaatattgacacctttagaggaacct 17506963  T

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Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 17546060 - 17546251
Alignment:
Q  3 gcaccacagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcac 102  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  17546060 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacaccaagaatcggtcac 17546159  T
Q  103 attaagaataccacgtggtgccaggttagatttagtaggtaatcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacct 194  Q
    |||||| |||||||||| |||||| ||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  17546160 attaagtataccacgtgatgccagattagatttagtaggtatgcgatcacggagcagtcgccacgcaaatattgacacctttagaggaacct 17546251  T

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Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 245
Target Start/End: Original strand, 15645127 - 15645350
Alignment:
Q  22 cccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtggt 121  Q
    ||||||||||||||| |||| ||||||||||  |||||||||||||||||| |||||||||| ||||| |||| ||  ||||||||  |||||||||| |    
T  15645127 cccaaagcaaggacaagagaaaaacaaatgatgagcatcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgtgat 15645226  T
Q  122 gccaggttagatttagtaggtaatcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaactaggtcggcaacct 221  Q
    |||| ||||||||||||||| |    |||||||||||| ||||| ||||||| ||||||||||||  ||| ||| |||||||||| ||| ||   | |||    
T  15645227 gccaagttagatttagtaggaaggtaatcacggagcagccgccaagcaaagactgacacctttagtggaatctgtttatgccaaattagatctaaatcct 15645326  T
Q  222 gagtaacctgcggtacctcctgag 245  Q
    ||||||||||| ||||||| ||||    
T  15645327 gagtaacctgcagtacctcgtgag 15645350  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 17504619 - 17504562
Alignment:
Q  190 aacctgattatgccaaactaggtcggcaacctgagtaacctgcggtacctcctgagat 247  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||    
T  17504619 aacctgattatgccaaattagatcgtcaacctgagtaacctgcggtacctcctgagat 17504562  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 17548595 - 17548652
Alignment:
Q  190 aacctgattatgccaaactaggtcggcaacctgagtaacctgcggtacctcctgagat 247  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||    
T  17548595 aacctgattatgccaaattagatcgtcaacctgagtaacctgcggtacctcctgagat 17548652  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 551674 - 551599
Alignment:
Q  131 gatttagtaggtaatcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaa 206  Q
    ||||| ||||| || |||||||||| ||| ||||| ||||| ||||||||||||| | ||||||| ||||||||||    
T  551674 gatttggtaggcaagcgatcacggatcagccgccaagcaaaaattgacacctttaaaggaacctgtttatgccaaa 551599  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 45976643 - 45976574
Alignment:
Q  22 cccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaa 91  Q
    ||||||||||| |||||| | |||||| |||| ||||||||||||||| || || || |||| |||||||    
T  45976643 cccaaagcaagtacacgacaaaaacaagtgacgagcatcctccacctgaccacatccagaaagacacaaa 45976574  T

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Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 7956882 - 7956698
Alignment:
Q  22 cccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtggt 121  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||| ||||| |||| ||  ||||||||  |||||||| | |    
T  7956882 cccaaagcaaggacatgagagaaacaaatgacgagcatcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgagat 7956783  T
Q  122 gccaggttagatttagtaggtaatcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaa 206  Q
    |||| ||||||||||||||| |  |||||||||||||  ||||| ||||||| ||||||||||||  ||||||| ||||||||||    
T  7956782 gccaagttagatttagtaggaaggcgatcacggagcaaccgccaagcaaagactgacacctttaggggaacctgtttatgccaaa 7956698  T

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Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 44 - 245
Target Start/End: Original strand, 14853834 - 14854035
Alignment:
Q  44 aacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtggtgccaggttagatttagtaggta 143  Q
    |||||||||| ||||||||||||||| || |||||||||| ||||| |||| |   ||||||||  |||||||||| ||||| |||||||||||||||      
T  14853834 aacaaatgacgagcatcctccacctgaccacaccccgaaacacacatagaagcatccacattaattataccacgtgatgccaagttagatttagtaggag 14853933  T
Q  144 atcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaactaggtcggcaacctgagtaacctgcggtacctcctg 243  Q
      |||||||||||||| ||||| ||||||| |||||||||||| |||||||| ||||||||||  |  ||| || |||||||||||||||||||||||||    
T  14853934 gacgatcacggagcagccgccaagcaaagactgacacctttaggagaacctgtttatgccaaatcaaatcgacatcctgagtaacctgcggtacctcctg 14854033  T
Q  244 ag 245  Q
    ||    
T  14854034 ag 14854035  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 18381101 - 18381153
Alignment:
Q  155 agcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaac 207  Q
    |||| ||||||||||||||| || ||||||||  ||||||| |||||||||||    
T  18381101 agcattcgccacgcaaagatagaaacctttaggggaacctgcttatgccaaac 18381153  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 39584909 - 39585005
Alignment:
Q  3 gcaccacagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggt 99  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  39584909 gcaccagagaccacaactccctaaagcaaggacacgagagaaacaaatgacgagcatcctccacctggccacaccccaaaatacacaaagaatcggt 39585005  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 32239704 - 32239760
Alignment:
Q  38 gagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaa 94  Q
    |||||||||||||||| ||||||||||||||| || |||||||||| ||||| ||||    
T  32239704 gagagaaacaaatgacgagcatcctccacctgaccacaccccgaaacacacatagaa 32239760  T

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