View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1117_low_2 (Length: 499)

Name: NF1117_low_2
Description: NF1117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1117_low_2
NF1117_low_2
[»] chr3 (3 HSPs)
chr3 (16-493)||(39030340-39030817)
chr3 (33-453)||(37862783-37863203)
chr3 (16-453)||(37858740-37859177)
[»] chr5 (5 HSPs)
chr5 (34-449)||(1478312-1478727)
chr5 (33-170)||(1482785-1482922)
chr5 (33-176)||(1487256-1487399)
chr5 (109-199)||(1509686-1509776)
chr5 (112-176)||(1492754-1492818)
[»] chr8 (2 HSPs)
chr8 (288-449)||(35251124-35251292)
chr8 (67-161)||(35251412-35251506)
[»] chr7 (2 HSPs)
chr7 (292-413)||(5310746-5310867)
chr7 (292-409)||(5289349-5289466)
[»] chr1 (3 HSPs)
chr1 (109-170)||(44129166-44129227)
chr1 (109-170)||(44133371-44133432)
chr1 (109-170)||(44141793-44141854)


Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 16 - 493
Target Start/End: Complemental strand, 39030817 - 39030340
Alignment:
Q  16 atgaataacacggatggacttgacatgttaccatactcactaagtacatgccgagtggcttgcattttctctggctttaagcctaatttggcttcaactt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39030817 atgaataacacggatggacttgacatgttaccatactcactaagtacatgccgagtggcttgcattttctctggctttaagcctaatttggcttcaactt 39030718  T
Q  116 ggtcaagaattgctcgtccgcctgggtgtgcaatccaaaaaattgaattgtaatcggagatattcaaagtttgaaaggcctcaacaagagttttctcaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39030717 ggtcaagaattgctcgtccgcctgggtgtgcaatccaaaaaattgaattgtaatcggagatattcaaaggttgaaaggcctcaacaagagttttctcaat 39030618  T
Q  216 gttctttgagatgaggtcaggaacatctttgatgatatgtaatgttagtcctgcttctctagtgtgagctttaatagctccttcactatctggaatgatg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39030617 gttctttgagatgaggtcaggaacatctttgatgatatgtaatgttagtcctgcttctctagtgtgagctttaatagctccttcactatctggaatgatg 39030518  T
Q  316 gtttgtgcagtccataccaattcaaacaaaggcttctcaacttctggcaacgggtctgaaccaacaatcacagctgccgcaccatctccaaacaatgccc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39030517 gtttgtgcagtccataccaattcaaacaaaggcttctcaacttctggcaacgggtctgaaccaacaatcacagctgccgcaccatctccaaacaatgccc 39030418  T
Q  416 gtcccataagactatcaagatcagtatcactaggtccaaaaatattaaataccctaatctctgaacaaaccatcaaca 493  Q
    ||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||| |||||||||||    
T  39030417 gtcccataagactatcaagatcagtatcactaggtccacgaaaattaaataccctaatctctgaactaaccatcaaca 39030340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 33 - 453
Target Start/End: Original strand, 37862783 - 37863203
Alignment:
Q  33 acttgacatgttaccatactcactaagtacatgccgagtggcttgcattttctctggctttaagcctaatttggcttcaacttggtcaagaattgctcgt 132  Q
    |||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||    
T  37862783 acttgacatgttaccatattcgctaagtacatgtcgagtggcttgcattttctctggctttaagcctaatttgagttcaacttggtcaagaattgctggt 37862882  T
Q  133 ccgcctgggtgtgcaatccaaaaaattgaattgtaatcggagatattcaaagtttgaaaggcctcaacaagagttttctcaatgttctttgagatgaggt 232  Q
    || |||||||| || |||||||| || ||||||||||| |||||||||||||  ||||| ||||||||||||| ||||||||||||||||||||  |||     
T  37862883 ccacctgggtgcgcgatccaaaagatggaattgtaatccgagatattcaaaggctgaaatgcctcaacaagagctttctcaatgttctttgagacaaggc 37862982  T
Q  233 caggaacatctttgatgatatgtaatgttagtcctgcttctctagtgtgagctttaatagctccttcactatctggaatgatggtttgtgcagtccatac 332  Q
    |||||||||| |||| || ||| ||||| ||||||||||||| |  |||| | | ||||||||||||||||||||||| ||| |||||||||||||| ||    
T  37862983 caggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacgattgtttgtgcagtccaaac 37863082  T
Q  333 caattcaaacaaaggcttctcaacttctggcaacgggtctgaaccaacaatcacagctgccgcaccatctccaaacaatgcccgtcccataagactatca 432  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||    
T  37863083 caattcaaacaaaggcttctcaacttctggcaacggatctgaaccaacaatcacagctgctgcaccatctccaaacaatgcctgccccacaagactatca 37863182  T
Q  433 agatcagtatcactaggtcca 453  Q
    |||| ||||||||||||||||    
T  37863183 agatgagtatcactaggtcca 37863203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 453
Target Start/End: Original strand, 37858740 - 37859177
Alignment:
Q  16 atgaataacacggatggacttgacatgttaccatactcactaagtacatgccgagtggcttgcattttctctggctttaagcctaatttggcttcaactt 115  Q
    |||||||||||  ||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  37858740 atgaataacacacatgcacttgacatgttaccatactcgctaagcacatgtcgagtggcttgcattttctctggctttaagcttaatttggcttccactt 37858839  T
Q  116 ggtcaagaattgctcgtccgcctgggtgtgcaatccaaaaaattgaattgtaatcggagatattcaaagtttgaaaggcctcaacaagagttttctcaat 215  Q
    |||| ||||||||| |||| || |||||||| |||||||| || ||||||||||| ||||||   |||| ||||||||||||| |||||| |||||||||    
T  37858840 ggtccagaattgctggtccaccagggtgtgcgatccaaaagatggaattgtaatcagagatacctaaaggttgaaaggcctcagcaagagctttctcaat 37858939  T
Q  216 gttctttgagatgaggtcaggaacatctttgatgatatgtaatgttagtcctgcttctctagtgtgagctttaatagctccttcactatctggaatgatg 315  Q
    |||||||||||| ||  |||||||||| |||| || ||| ||||| || ||  |||| | |  |||| | | ||| ||||||||||||||||||| |||     
T  37858940 gttctttgagataagaccaggaacatccttgaggagatggaatgtaagcccgacttcacgaaggtgaccgtcaattgctccttcactatctggaaggatc 37859039  T
Q  316 gtttgtgcagtccataccaattcaaacaaaggcttctcaacttctggcaacgggtctgaaccaacaatcacagctgccgcaccatctccaaacaatgccc 415  Q
    ||||||||||||||||||||||||||||| || |||||||||| ||| || ||||||||||| || ||||||||||| ||||||||||||||||||||      
T  37859040 gtttgtgcagtccataccaattcaaacaagggtttctcaacttgtggtaatgggtctgaacctacgatcacagctgctgcaccatctccaaacaatgctt 37859139  T
Q  416 gtcccataagactatcaagatcagtatcactaggtcca 453  Q
    | |||| ||| |||||||||| ||| ||||| ||||||    
T  37859140 gccccacaaggctatcaagatgagtgtcactgggtcca 37859177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 34 - 449
Target Start/End: Complemental strand, 1478727 - 1478312
Alignment:
Q  34 cttgacatgttaccatactcactaagtacatgccgagtggcttgcattttctctggctttaagcctaatttggcttcaacttggtcaagaattgctcgtc 133  Q
    ||||||||||||||||| ||||||||||| | || |||||| | |||||| || || ||||||||||| ||  ||||||||||||| ||||||||  |||    
T  1478727 cttgacatgttaccatattcactaagtacttccctagtggccttcattttttcaggttttaagcctaacttttcttcaacttggtctagaattgcgggtc 1478628  T
Q  134 cgcctgggtgtgcaatccaaaaaattgaattgtaatcggagatattcaaagtttgaaaggcctcaacaagagttttctcaatgttctttgagatgaggtc 233  Q
    | |||||||| |||||||| || |||||||| ||||| ||||| || || | ||| || ||||| || |  | ||| |||||||||||||| |  |   |    
T  1478627 cacctgggtgagcaatccagaagattgaattataatcagagatgtttaatggttggaaagcctcgaccaatgctttatcaatgttctttgaaacaatccc 1478528  T
Q  234 aggaacatctttgatgatatgtaatgttagtcctgcttctctagtgtgagctttaatagctccttcactatctggaatgatggtttgtgcagtccatacc 333  Q
    |||||||||||| |  |  || |||||||| || ||||| | |  |||| | | ||| ||||| ||||| ||||||   || |||||||||||||| |||    
T  1478527 aggaacatctttaagaaggtgaaatgttagaccagcttcacgaaggtgaccatcaatggctccctcactgtctggagcaattgtttgtgcagtccaaacc 1478428  T
Q  334 aattcaaacaaaggcttctcaacttctggcaacgggtctgaaccaacaatcacagctgccgcaccatctccaaacaatgcccgtcccataagactatcaa 433  Q
    |  ||||| | ||| ||||||| |||||| |  ||||| ||||||||||| |  || || |||||||||||||| | |||  |||| | |||||| || |    
T  1478427 atctcaaatataggtttctcaatttctggtattgggtcagaaccaacaatgagtgcagcagcaccatctccaaatagtgcttgtccaacaagactgtcca 1478328  T
Q  434 gatcagtatcactagg 449  Q
     || ||||||||||||    
T  1478327 aatgagtatcactagg 1478312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 1482922 - 1482785
Alignment:
Q  33 acttgacatgttaccatactcactaagtacatgccgagtggcttgcattttctctggctttaagcctaatttggcttcaacttggtcaagaattgctcgt 132  Q
    |||||||||||||||||| ||||||||||| |  | |||||||| ||| || || || ||||||||||| ||   ||||||||| |||||||||||  ||    
T  1482922 acttgacatgttaccatattcactaagtacttctctagtggctttcatcttttcaggttttaagcctaacttttgttcaacttgatcaagaattgcgggt 1482823  T
Q  133 ccgcctgggtgtgcaatccaaaaaattgaattgtaatc 170  Q
    || ||||| || ||||||||||| ||||| ||||||||    
T  1482822 ccacctggatgagcaatccaaaagattgagttgtaatc 1482785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 176
Target Start/End: Complemental strand, 1487399 - 1487256
Alignment:
Q  33 acttgacatgttaccatactcactaagtacatgccgagtggcttgcattttctctggctttaagcctaatttggcttcaacttggtcaagaattgctcgt 132  Q
    |||||||||||||||||| ||||||||||| | || |||||| | ||| || || || || ||  |||| ||   |||||| ||||| | ||||||  ||    
T  1487399 acttgacatgttaccatattcactaagtacttccctagtggccttcatcttttccggtttcaaagctaacttttgttcaacatggtccaaaattgcaggt 1487300  T
Q  133 ccgcctgggtgtgcaatccaaaaaattgaattgtaatcggagat 176  Q
    |||||||||||  ||||||||||||||| ||||||||| |||||    
T  1487299 ccgcctgggtggacaatccaaaaaattgcattgtaatcagagat 1487256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 1509776 - 1509686
Alignment:
Q  109 tcaacttggtcaagaattgctcgtccgcctgggtgtgcaatccaaaaaattgaattgtaatcggagatattcaaagtttgaaaggcctcaa 199  Q
    ||||||||||||| ||||||   |||  ||||||| ||||||||||| ||||| |||||||| ||||| || || | |||||| |||||||    
T  1509776 tcaacttggtcaataattgcggctccatctgggtgagcaatccaaaatattgagttgtaatcagagatgtttaatggttgaaatgcctcaa 1509686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 1492818 - 1492754
Alignment:
Q  112 acttggtcaagaattgctcgtccgcctgggtgtgcaatccaaaaaattgaattgtaatcggagat 176  Q
    |||||||| | ||||||  |||| || ||||||||||||||||| ||||| |||||||| |||||    
T  1492818 acttggtctaaaattgcaggtccaccagggtgtgcaatccaaaagattgagttgtaatcagagat 1492754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 449
Target Start/End: Complemental strand, 35251292 - 35251124
Alignment:
Q  288 aatagctccttcactatctggaatgatggtttgtgcagtccataccaattcaaacaaaggcttctcaacttctggcaacgggtctgaaccaacaatcaca 387  Q
    ||||||||||| |||||| |||| ||| ||||||||||||||  | |  |||||||||||  ||||||| || || || || ||||||||||| ||||||    
T  35251292 aatagctccttgactatcaggaaggattgtttgtgcagtccactctagctcaaacaaaggtctctcaacctcaggtaatggatctgaaccaacgatcaca 35251193  T
Q  388 -------gctgccgcaccatctccaaacaatgcccgtcccataagactatcaagatcagtatcactagg 449  Q
           ||||| || |||||||||||||||||  ||||||  |||||||||||||  || ||||||||    
T  35251192 gctgcaggctgcagcgccatctccaaacaatgcttgtcccacgagactatcaagatgggtgtcactagg 35251124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 35251506 - 35251412
Alignment:
Q  67 cgagtggcttgcattttctctggctttaagcctaatttggcttcaacttggtcaagaattgctcgtccgcctgggtgtgcaatccaaaaaattga 161  Q
    |||||||||| || ||| || ||||| |||||||| ||| | ||||||||||||||||| ||| |||| || | ||| ||||||||||| |||||    
T  35251506 cgagtggcttccaatttttcaggcttcaagcctaacttgtcctcaacttggtcaagaatcgctggtccacccgtgtgagcaatccaaaagattga 35251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 413
Target Start/End: Complemental strand, 5310867 - 5310746
Alignment:
Q  292 gctccttcactatctggaatgatggtttgtgcagtccataccaattcaaacaaaggcttctcaacttctggcaacgggtctgaaccaacaatcacagctg 391  Q
    |||||||||||||| |||   || |||||||||||||| ||||  ||||| | ||| ||||||| |||||| |  ||||| ||||||||||| | ||| |    
T  5310867 gctccttcactatcaggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaataagagcag 5310768  T
Q  392 ccgcaccatctccaaacaatgc 413  Q
    | || |||||||||||||||||    
T  5310767 cagctccatctccaaacaatgc 5310746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 409
Target Start/End: Original strand, 5289349 - 5289466
Alignment:
Q  292 gctccttcactatctggaatgatggtttgtgcagtccataccaattcaaacaaaggcttctcaacttctggcaacgggtctgaaccaacaatcacagctg 391  Q
    |||||||||||||| |||   || |||||||||||||| ||||  ||||| | ||| ||||||| |||||| |  ||||| ||||||||||| | ||| |    
T  5289349 gctccttcactatccggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaataagagcag 5289448  T
Q  392 ccgcaccatctccaaaca 409  Q
    | || |||||||||||||    
T  5289449 cagctccatctccaaaca 5289466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 44129227 - 44129166
Alignment:
Q  109 tcaacttggtcaagaattgctcgtccgcctgggtgtgcaatccaaaaaattgaattgtaatc 170  Q
    |||||||| || ||||||||  |||| || ||||||||||||||||| ||||||||||||||    
T  44129227 tcaacttgatctagaattgcaggtccaccagggtgtgcaatccaaaagattgaattgtaatc 44129166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 44133432 - 44133371
Alignment:
Q  109 tcaacttggtcaagaattgctcgtccgcctgggtgtgcaatccaaaaaattgaattgtaatc 170  Q
    |||||||| || ||||||||  |||| || ||||||||||||||||| ||||||||||||||    
T  44133432 tcaacttgatctagaattgcaggtccaccagggtgtgcaatccaaaagattgaattgtaatc 44133371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 44141854 - 44141793
Alignment:
Q  109 tcaacttggtcaagaattgctcgtccgcctgggtgtgcaatccaaaaaattgaattgtaatc 170  Q
    |||||||| || ||||||||  |||| || ||||||||||||||||| ||||||||||||||    
T  44141854 tcaacttgatctagaattgcaggtccaccagggtgtgcaatccaaaagattgaattgtaatc 44141793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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